Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A11f
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 86 6e-18
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 86 6e-18
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 86 6e-18
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 82 7e-17
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 81 2e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 81 2e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 73 6e-14
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 69 5e-13
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 0.18
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 30 0.31
At1g67140.1 68414.m07638 expressed protein 30 0.41
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 29 0.94
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t... 27 3.8
At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS cla... 27 3.8
At3g11070.1 68416.m01337 outer membrane OMP85 family protein con... 26 5.0
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 26 6.7
At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containi... 26 6.7
At3g44670.1 68416.m04804 disease resistance protein RPP1-Ws[A,C]... 25 8.8
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 25 8.8
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 85.8 bits (203), Expect = 6e-18
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 82.2 bits (194), Expect = 7e-17
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 80.6 bits (190), Expect = 2e-16
Identities = 34/70 (48%), Positives = 54/70 (77%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ AA+LLAVLGG P+A +++ I+ +VG + D E ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 210 KLSSMPVGGG 239
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 72.5 bits (170), Expect = 6e-14
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 210 KLSSMPVGGG 239
K++++ GGG
Sbjct: 61 KMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 69.3 bits (162), Expect = 5e-13
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +3
Query: 30 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 209
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 210 KLSSMPVGG 236
K+S++ GG
Sbjct: 61 KMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +3
Query: 99 EKILSSVGIEADAEKLKKVITELNGKDVE----QLIAAGREKLSSMP 227
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -1
Query: 248 CRCSASYWH*RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRSLA 69
C+ S H +++ S +L N++A+++ +K L S +LNVSG++
Sbjct: 79 CKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSL 138
Query: 68 TQHSQ*IRGHVTHFLSPN 15
Q Q R H + PN
Sbjct: 139 PQTIQNCRFHTSTKSGPN 156
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 215 QLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 90
Q L++GR L+++L L++LS SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
protein low similarity to CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 510
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 87 AADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLS 218
A+ VE +S+ DAE++ K++T+ VE L+ KLS
Sbjct: 50 ASSVETQVSANDASQDAERICKILTKFTDSKVETLLNEASVKLS 93
>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
GI:14279543; contains Pfam profiles PF02483: SMC family
C-terminal domain, PF02463: RecF/RecN/SMC N terminal
domain
Length = 1171
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 123 IEADAEKLKKVITELNGKDVEQL 191
IE D K+KKVI EL+ K E L
Sbjct: 1003 IETDKSKIKKVIEELDEKKKETL 1025
>At1g69550.1 68414.m07998 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 703
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 235 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASAS 125
PP+ + S S P+ +S STS P SS S S + +
Sbjct: 43 PPSSLASSTSPPSTLSSSTSHPSSSTSPPSSLSCTGT 79
>At3g11070.1 68416.m01337 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 520
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 190 SCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPS 62
+C+ ++ S F +F+A P L F TS AG+VLP S
Sbjct: 450 ACAGNMAKLSENEFRNFTA----PKFLETFRTSVGAGIVLPTS 488
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 138 EKLKKVITELNGKDVEQLIAAGREKLSS 221
EKL +V+TE+ G D + + G +++
Sbjct: 1167 EKLDRVVTEITGNDAAECMTDGNRDIAT 1194
>At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 537
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 167 ELSDYFLKLLSVSFDTDGAEDLLNVSGSWRSLATQ 63
EL F + D DGAED + +W+ L ++
Sbjct: 460 ELVSLFFLHFEKAKDVDGAEDFCKILSNWKPLDSE 494
>At3g44670.1 68416.m04804 disease resistance protein
RPP1-Ws[A,C]-like (TIR-NBS-LRR class), putative domain
signature TIR-NBS-LRR exists, suggestive of a disease
resistance protein. Closest Col-0 homolog to both RPP1
Ws-A and RPP1 Ws-C
Length = 872
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 218 RQLLTSGRNKLFNILAVELSDYFLKLLSVSFDTDGAEDLLNVS 90
RQLL G + +L+ + D + + ++FD G +D LN+S
Sbjct: 248 RQLLV-GERDICEVLSDDTIDS-RRFIGITFDLFGTQDYLNIS 288
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 36 YVAAYLLAV-LGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 212
Y A L+ V L G P D+ + +E +EKL +++TE + + A +E+
Sbjct: 108 YCAGELVKVTLSGNQQPIRTDI----TEAAMELGSEKLSQLVTEAYKDAHAKSVVAMKER 163
Query: 213 LSSM 224
+S +
Sbjct: 164 MSDL 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,723,639
Number of Sequences: 28952
Number of extensions: 70635
Number of successful extensions: 286
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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