Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0006.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family...    29   1.5  
At5g27370.1 68418.m03268 hypothetical protein contains Pfam prof...    28   3.4  
At2g33170.1 68415.m04064 leucine-rich repeat transmembrane prote...    28   3.4  
At5g52450.1 68418.m06508 MATE efflux protein-related strong simi...    27   4.4  
At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase, pu...    27   4.4  
At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative / UDP...    27   4.4  
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP...    27   4.4  
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    27   5.9  
At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative / UDP...    27   5.9  
At4g02700.1 68417.m00365 sulfate transporter identical to sulfat...    27   7.7  

>At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 466

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 53  KYCFFLLITKSLMLFIFTNDPRIYANNFYMRKTIGDSHMIYTGNTIFHNY 202
           KY + +   KS+  F FT  P+I  +  Y    IGD    Y  N   ++Y
Sbjct: 129 KYIYEVGTDKSVRQFSFTTPPKIGPDVPYTFGIIGDLGQTYASNETLYHY 178


>At5g27370.1 68418.m03268 hypothetical protein contains Pfam profile
           PF05078: Protein of unknown function (DUF679)
          Length = 191

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 399 SYCFV*FFISSKLQSCVGADTHTFFNISFINILHLL 292
           S+C    F SS   S VG D   ++ I+  N LH+L
Sbjct: 55  SFCAAACFFSSFTDSYVGQDGRIYYGIATSNGLHIL 90


>At2g33170.1 68415.m04064 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           [Pinus sylvestris] gi|12054894|emb|CAC20842; contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 1124

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 112 STNLRKQFLYEEDNRGFTHDIHRQHN 189
           S N   QFL E  NRGF   ++R HN
Sbjct: 32  SLNSDGQFLLELKNRGFQDSLNRLHN 57


>At5g52450.1 68418.m06508 MATE efflux protein-related strong
           similarity to unknown protein (pir||T02324); contains
           Pfam profile PF01554 Uncharacterized membrane protein
           family
          Length = 486

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 248 LNLFIVEMMSICLSIYNYEILCCLCISCVNPLLSSSYKN-CLRKFVDHW 105
           L L +   + +CL ++++E+L  L     NP+L +S  + CL      W
Sbjct: 252 LRLAVPSALMVCLEMWSFELLVLLSGLLPNPVLETSVLSICLNTSGTMW 300


>At5g48570.1 68418.m06007 peptidyl-prolyl cis-trans isomerase,
           putative / FK506-binding protein, putative similar to
           rof1 [Arabidopsis thaliana] GI:1373396
          Length = 578

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 DIYETDIKKSVCVRSDARLEFTGYKKLNETIRE 402
           D+ E DIKK++ +  D +     YKKL E ++E
Sbjct: 510 DLAELDIKKALEIDPDNKEVKIEYKKLKEKVKE 542


>At4g23920.1 68417.m03440 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 350

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 349 DARLEFTGYKKLNETIREIVLYYDN 423
           DA + F G K + E++ + +LYY+N
Sbjct: 80  DAVIHFAGLKAVGESVEKPLLYYNN 104


>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082]
          Length = 351

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 349 DARLEFTGYKKLNETIREIVLYYDN 423
           DA + F G K + E++ + +LYY+N
Sbjct: 81  DAVIHFAGLKAVGESVEKPLLYYNN 105


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 248 LNLFIVEMMSICLSIYNYEILCCLCISCVNP 156
           + L I   +S+CL  + YEI+  LC   +NP
Sbjct: 259 MKLAIPSCVSVCLEWWWYEIMILLCGLLLNP 289


>At1g64440.1 68414.m07304 UDP-glucose 4-epimerase, putative /
           UDP-galactose 4-epimerase, putative / Galactowaldenase,
           putative similar to UDP-galactose 4-epimerase from
           Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
           GI:3021357 [AJ005082] (Plant Sci. 142, 147-154 (1999))
          Length = 348

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 349 DARLEFTGYKKLNETIREIVLYYDN 423
           DA + F G K + E++ + +LYY+N
Sbjct: 80  DAVMHFAGLKAVGESVAKPLLYYNN 104


>At4g02700.1 68417.m00365 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:2130944
          Length = 646

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 74  ITKSLMLFIFTNDPRIYANNFYMRKTIG 157
           IT+S +L +  + P  +AN+ Y+R  IG
Sbjct: 509 ITRSSLLILHIDGPIYFANSTYLRDRIG 536


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,416,439
Number of Sequences: 28952
Number of extensions: 154585
Number of successful extensions: 361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)