Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0041
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17670.1 68418.m02071 expressed protein                             30   1.5  
At5g29090.1 68418.m03619 hypothetical protein                          30   2.0  
At5g38210.1 68418.m04606 serine/threonine protein kinase family ...    29   4.5  
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    28   6.0  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    28   7.9  

>At5g17670.1 68418.m02071 expressed protein
          Length = 309

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 20  AAEHSGKMVMHDPFAMRPFXGYNFGDYLKHWPSMPQPG--RNMPKIFHVNWFRKDEQ--G 187
           ++  S   V + P  + P  G N GDY K   ++ + G    +  +  ++WFR       
Sbjct: 22  SSSSSAGNVKYRPAVILPGLGNNTGDYKKLEVTLGEYGVPAVVAAVSRLDWFRNAAGLVD 81

Query: 188 KFLWPGFGENSRVLDWILRRCD 253
              W G      VLDW L R D
Sbjct: 82  PAYWRGTLRPRPVLDWYLNRID 103


>At5g29090.1 68418.m03619 hypothetical protein 
          Length = 195

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 197 WPGFGENSRVLDWILRRCDG 256
           W G+  N RVLD +  RCDG
Sbjct: 54  WSGWASNVRVLDGVAGRCDG 73


>At5g38210.1 68418.m04606 serine/threonine protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 686

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 277 PLGYIPRAGALNTENLSAV 333
           P+GY P  GALN  NL +V
Sbjct: 179 PIGYAPEEGALNVTNLESV 197


>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 280 LGYIPRAGALNTENLSAVDMNELFSIPKDFWLQESDAIEK 399
           LG   +  A + +++S  ++ ELF+I  D+  +E DAI K
Sbjct: 121 LGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRK 160


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
            similarity to reproductive meristem gene 1 from [Brassica
            oleracea var. botrytis] GI:3170424, [Arabidopsis
            thaliana] GI:13604227; contains Pfam profile PF02362: B3
            DNA binding domain
          Length = 1440

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 581  FVMKTERSTLLFDTDNAPHTWVTGISVNKREG-LMFVSKIGRLCSLNLKI 727
            FV     STL +DT   P  ++    V+KR G ++ +++ G+  +L+LK+
Sbjct: 1187 FVANVAPSTLRYDTLYLPKRFMRENGVDKRRGEMILMNEKGKSWTLDLKL 1236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,916
Number of Sequences: 28952
Number of extensions: 364391
Number of successful extensions: 1095
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)