Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0023
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.58 
At5g07790.1 68418.m00892 expressed protein                             28   3.1  
At2g21300.1 68415.m02535 kinesin motor family protein contains P...    27   4.1  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   5.4  
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea...    27   5.4  
At1g68430.1 68414.m07817 expressed protein                             27   5.4  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 168 ISGSRARFQLSGNSGRKHSRCCTSILRKFVAGSIVS 275
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 99  SSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFVAGSIVSQ 278
           S  +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ +  +  + +S 
Sbjct: 411 SGRVKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISS 469

Query: 279 LTA 287
             A
Sbjct: 470 SVA 472


>At2g21300.1 68415.m02535 kinesin motor family protein contains Pfam
           profile: kinesin motor domain PF00225
          Length = 862

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 78  KLKEHGASSCISGKRGRRCCNIWHWGSVDSISG 176
           K+ EH ASS       R   N W  GSV  ISG
Sbjct: 425 KMVEHDASSKAGTPHFRNRTNKWEDGSVSEISG 457


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -3

Query: 172 LMESTDPQCHILQHRRPRLPLMQLEAPCS----FNFCSLRAIRRYKSYYVD*G 26
           L++ +DP CH+       LP +     C+     ++CS     R+K   +D G
Sbjct: 30  LLQPSDPPCHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVG 82


>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, muscle
           (Swiss-Prot:P05661) [Drosophila melanogaster]
          Length = 468

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 197 QRE*RQEAQPLLHKHTTEICGRQHCVT 277
           +R+ R+E++ L  K T E+C  +HC++
Sbjct: 237 ERKVRKESETLHRKLTRELCEAKHCLS 263


>At1g68430.1 68414.m07817 expressed protein
          Length = 146

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 209 RQEAQPLLHKHTTEICGRQ 265
           R+E QPL+H H  ++ GR+
Sbjct: 53  RREQQPLIHHHHKDVAGRK 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,892,257
Number of Sequences: 28952
Number of extensions: 168877
Number of successful extensions: 401
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)