SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0017
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    34   0.099
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    34   0.099
At5g38560.1 68418.m04662 protein kinase family protein contains ...    34   0.099
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ...    33   0.23 
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ...    33   0.23 
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    32   0.53 
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    32   0.53 
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    31   1.2  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.6  
At2g25625.2 68415.m03071 expressed protein                             30   2.1  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    30   2.1  
At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) / ovule...    29   3.7  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    29   4.9  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    29   4.9  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   4.9  
At1g76010.1 68414.m08825 expressed protein                             29   4.9  
At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai...    28   6.5  
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai...    28   6.5  
At2g27390.1 68415.m03306 proline-rich family protein contains pr...    28   8.6  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    28   8.6  

>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
 Frame = +2

Query: 95  RGRQDRPRAPRELGPPRSRRDHRTKR-GGGESTGAALGAGFI--NRSDGR-PRSRHVLSG 262
           RG  D  R     G   S R + + R  GG  +G + G+G    N S G+ P     +  
Sbjct: 131 RGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPS 190

Query: 263 YTQRGGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRG 415
           Y   G     P    G + +P  T   G  P Y  PRGG   D      RG
Sbjct: 191 YDGSGS--YPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRG 239


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
 Frame = +2

Query: 95  RGRQDRPRAPRELGPPRSRRDHRTKR-GGGESTGAALGAGFI--NRSDGR-PRSRHVLSG 262
           RG  D  R     G   S R + + R  GG  +G + G+G    N S G+ P     +  
Sbjct: 131 RGGGDSDRGGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPS 190

Query: 263 YTQRGGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQRVDPTRQDYRG 415
           Y   G     P    G + +P  T   G  P Y  PRGG   D      RG
Sbjct: 191 YDGSGS--YPPPTGYGMEAVPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRG 239


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 30/99 (30%), Positives = 39/99 (39%)
 Frame = -2

Query: 471 SPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESVM*GMPSSPSASEG 292
           SPP  S SS TA     + P           PP   + P P+   S    + SSP  S  
Sbjct: 11  SPP-SSNSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPPSSS 69

Query: 291 PRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPP 175
           P  SPP    P  T      P + + +P P + P  +PP
Sbjct: 70  PPPSPPVITSPPPTVASSPPPPVVIASPPP-STPATTPP 107


>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3529

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 26/97 (26%), Positives = 33/97 (34%)
 Frame = +2

Query: 95   RGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQR 274
            RGR    R  + L P       RT+  G   + AA G  F++       + H  S     
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALT 1508

Query: 275  GGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQR 385
              D+ GP         P  T   G G G    RG  R
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGR 1545


>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
            similar to transcriptional activator HBRM [Homo sapiens]
            GI:414117; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain; identical to cDNA putative chromatin
            remodeling protein SYD (SPLAYED) GI:13603720
          Length = 3574

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 26/97 (26%), Positives = 33/97 (34%)
 Frame = +2

Query: 95   RGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQR 274
            RGR    R  + L P       RT+  G   + AA G  F++       + H  S     
Sbjct: 1449 RGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALT 1508

Query: 275  GGDILGPSDALGDDGIPYMTLSYGNGPGYREPRGGQR 385
              D+ GP         P  T   G G G    RG  R
Sbjct: 1509 SPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGR 1545


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
 Frame = +2

Query: 113 PRAP-RELGPPRSRRDHRTK--RGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRG-- 277
           P+ P + L P ++ R+ R+   RGGG   G   G G  NR DG   +     GYT+    
Sbjct: 45  PKLPSKPLPPAQAVREARSDAPRGGGGRGGFNRGRGGYNRDDG---NNGYSGGYTKPSGE 101

Query: 278 GDILGPS-DALGDDGIPYMTL-SYGNGPGYREPRGG 379
           GD+   S +  G  G P  +    G GPG    RGG
Sbjct: 102 GDVSKSSYERRGGGGAPRGSFRGEGGGPGGGR-RGG 136


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 28/78 (35%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +2

Query: 149 RRDHRTKRGGGESTGAA--LGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGI 322
           R  +R  RG G   G     G G+  R DGR R      GY+ R GD  G     GD G 
Sbjct: 3   RGGYRGGRGDGRGRGGGGDRGRGYSGRGDGRGRGGDGDRGYSGR-GDGHGRGGG-GDRGR 60

Query: 323 PYMTLSYGNGPGYREPRG 376
            Y     G G G    RG
Sbjct: 61  GYSGRGDGRGRGGGGDRG 78


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +2

Query: 173 GGGESTGAALGAGFINRSDGRP--RSRHVLSGYTQRGGDILGPSDALGDDGIPYMTLSYG 346
           GG    G + G+G+  R D     + ++  SGY   GG   G     G +G+      YG
Sbjct: 206 GGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGV-----GYG 260

Query: 347 NGPGYREPRGGQRVDPT 397
              GY  P G    +P+
Sbjct: 261 GFGGYGNPAGAPYGNPS 277


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
 Frame = -2

Query: 375 PLGSRYPGP-----LPYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMN 211
           P G+R P P     LP   V   +PS P    G    PP    P    R  GLPS   + 
Sbjct: 437 PTGARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIG 496

Query: 210 PAPRAAPVLSPPP 172
            +  A  + SP P
Sbjct: 497 GSHAANHLESPSP 509


>At2g25625.2 68415.m03071 expressed protein
          Length = 151

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 506 ASSLASTSRVTSRIAWRTQHASVP 577
           A SLAS  + TS+I+WRT++ + P
Sbjct: 19  AQSLASLLKTTSKISWRTENETEP 42


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 28/107 (26%), Positives = 39/107 (36%)
 Frame = -2

Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPLPYESVM*GMP 316
           P A+  T SPP VS         T   P  +    +   PP     P P P        P
Sbjct: 104 PPASAPTVSPPPVSPPPAP----TSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQAP 159

Query: 315 SSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPP 175
           S  S    P  +P +     +  R    P+   + P+P + PVL+ P
Sbjct: 160 SPISLPPAPAPAPTKHKRKHKHKRHHHAPAPAPIPPSPPSPPVLTDP 206


>At4g21750.1 68417.m03148 L1 specific homeobox gene (ML1) /
           ovule-specific homeobox protein A20 nearly identical to
           meristem L1 layer homeobox protein A20 (AtML1)
           [Arabidopsis thaliana] GI:1881536, protodermal factor2
           (PDF2) [Arabidopsis thaliana] GI:14276060
          Length = 762

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 170 RGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDDGIPYMTLSYGN 349
           RGGG S  A+ GAG      G   +  V++     GG +L  +  +  D +P   LS G+
Sbjct: 681 RGGGGSANASAGAGV--EGGGEGNNLEVVTTTGSCGGSLLTVAFQILVDSVPTAKLSLGS 738


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 378 PPLGSRYPGPLPY--ESVM*GMPSSPSASEGPRMSPP 274
           PP G +YP P P+  ++   G   +PS+SE  +  PP
Sbjct: 634 PPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 378 PPLGSRYPGPLPY--ESVM*GMPSSPSASEGPRMSPP 274
           PP G +YP P P+  ++   G   +PS+SE  +  PP
Sbjct: 634 PPYGMQYPPPPPHVTQAPPPGTTQNPSSSEPQQSFPP 670


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = -2

Query: 495 PQANTATSSPP*VSESSGTAAGYTYSDPR*SCRVGSTRCPPLGSRYPGPL-PYESVM*GM 319
           P       SPP    S G+    + S P  S  + S   PP  S  P P+ P ++    +
Sbjct: 527 PSPPITVPSPPSTPTSPGSPP--SPSSPTPSSPIPS---PPTPSTPPTPISPGQNSPPII 581

Query: 318 PSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
           PS P     P  SP   + P+       +PS  ++ P P + P  +P P
Sbjct: 582 PSPPFTGPSPPSSPSPPLPPV-------IPSPPIVGPTPSSPPPSTPTP 623


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 27/83 (32%), Positives = 34/83 (40%)
 Frame = +2

Query: 137 PPRSRRDHRTKRGGGESTGAALGAGFINRSDGRPRSRHVLSGYTQRGGDILGPSDALGDD 316
           PP+ R  +   +G G   G     G+    DG P+ R    G +Q  G   GPS   G  
Sbjct: 243 PPQGRGGYDGPQGRGGYDGPQGRRGY----DGPPQGRGGYDGPSQGRGGYDGPSQGRGG- 297

Query: 317 GIPYMTLSYGNGPGYREPRGGQR 385
              Y   S G G GY  P+G  R
Sbjct: 298 ---YDGPSQGRG-GYDGPQGRGR 316



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
 Frame = +2

Query: 95  RGRQDRPRAPRE-LGPPRSRRDHRTKRGGGESTGAALGA--GFINRSDGRP 238
           RG  D P   R     P+ R   R +  GG   G   G   GF NRSDG P
Sbjct: 295 RGGYDGPSQGRGGYDGPQGRGRGRGRGRGGRGRGGGRGGDGGFNNRSDGPP 345


>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 460

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 23  DPGRAHGSG-DQIVESQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGA 196
           D GR  G   DQ      GR+    R R     A R +GPPR +   R+ R    ++ A
Sbjct: 230 DAGRRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRA 288


>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 456

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 23  DPGRAHGSG-DQIVESQQGRILLVCRGRQDRPRAPRELGPPRSRRDHRTKRGGGESTGA 196
           D GR  G   DQ      GR+    R R     A R +GPPR +   R+ R    ++ A
Sbjct: 230 DAGRRFGPPRDQSPPRNAGRVTGSPRDRSPPRNAGRRMGPPRDQSPPRSTRSFSSNSRA 288


>At2g27390.1 68415.m03306 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 134

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
 Frame = -2

Query: 369 GSRYPGPLPYESVM*GMPSSP--SASEGPRMSPP-RCVYPLRT*---RERGLPSLRLMNP 208
           G+  P PL +  +    P SP  S S  PR+ PP   ++P       R    P L    P
Sbjct: 25  GTCCPPPLVFPLLPLSPPPSPPPSPSSPPRLPPPFPALFPPEPPLPPRFELPPPLFPPPP 84

Query: 207 APRAAPVLSPPP 172
            PR  P L PPP
Sbjct: 85  LPRLPPPLLPPP 96


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/58 (31%), Positives = 21/58 (36%)
 Frame = -2

Query: 345 PYESVM*GMPSSPSASEGPRMSPPRCVYPLRT*RERGLPSLRLMNPAPRAAPVLSPPP 172
           P E+ +   P  PS        PP    P+    E   P        P A PV SPPP
Sbjct: 63  PPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTEAPPPANPVSSPPP 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,558
Number of Sequences: 28952
Number of extensions: 374585
Number of successful extensions: 1281
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -