Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0005
(804 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4) id... 122 3e-28
At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3) id... 119 2e-27
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 47 1e-05
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 44 2e-04
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 43 2e-04
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 42 5e-04
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 41 0.001
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ... 38 0.006
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ... 38 0.006
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s... 38 0.006
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 38 0.008
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 38 0.010
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ... 38 0.010
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ... 37 0.014
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 37 0.014
At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f... 37 0.014
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f... 37 0.014
At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putativ... 36 0.024
At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putativ... 36 0.024
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f... 36 0.031
At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative... 35 0.055
At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase f... 35 0.073
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 35 0.073
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 34 0.096
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f... 34 0.096
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 33 0.22
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative... 32 0.39
At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative s... 32 0.51
At3g03970.3 68416.m00418 expressed protein 31 0.68
At3g03970.2 68416.m00417 expressed protein 31 0.68
At3g03970.1 68416.m00416 expressed protein 31 0.68
At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ... 31 0.90
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 30 1.6
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative... 29 2.7
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative... 29 2.7
At4g35600.1 68417.m05057 protein kinase family protein contains ... 29 4.8
At2g39810.1 68415.m04890 expressed protein 28 6.3
At5g25250.1 68418.m02993 expressed protein 28 8.3
At5g08090.1 68418.m00943 hypothetical protein 28 8.3
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 28 8.3
>At2g22310.1 68415.m02647 ubiquitin-specific protease 4 (UBP4)
identical to GI:2347100
Length = 365
Score = 122 bits (294), Expect = 3e-28
Identities = 57/87 (65%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Frame = +1
Query: 247 PTYEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR-TKETLLTCLADLFYS 423
P E YFG NFGNTCY NSVLQALYFC PFRE++LE+ A NK +E LLTCLADLF
Sbjct: 17 PEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTCLADLFSQ 76
Query: 424 IATQKKKVGSIAPKKFIARLRKEKEEF 504
I++QKKK G IAPK+F+ RL+K+ E F
Sbjct: 77 ISSQKKKTGVIAPKRFVQRLKKQNELF 103
Score = 64.9 bits (151), Expect = 6e-11
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Frame = +3
Query: 510 YMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSVP----HNTEP--T 671
YM QDAHEFLN+L+N + EI+ E + + ++S E + P + EP T
Sbjct: 106 YMHQDAHEFLNYLLNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVT 165
Query: 672 WVHEIFQGTLTSETRCL 722
WVH+IFQG LT+ETRCL
Sbjct: 166 WVHKIFQGILTNETRCL 182
>At4g39910.1 68417.m05653 ubiquitin-specific protease 3 (UBP3)
identical to GI:2347098
Length = 371
Score = 119 bits (287), Expect = 2e-27
Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 3/89 (3%)
Frame = +1
Query: 247 PTYEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKR---TKETLLTCLADLF 417
P E YFG NFGNTCY NSVLQALYFC PFRE++LEY NK +E L+TCLADLF
Sbjct: 17 PEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLF 76
Query: 418 YSIATQKKKVGSIAPKKFIARLRKEKEEF 504
I++QKKK G IAPK+F+ RL+K+ E F
Sbjct: 77 SQISSQKKKTGVIAPKRFVQRLKKQNELF 105
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 9/80 (11%)
Frame = +3
Query: 510 YMQQDAHEFLNFLINHINEIIL--AERNQSTLKVQKNNSGENVTCNGSVPH-----NTEP 668
YM QDAHEFLN+L+N + +I+ A+ ++ + ++S E + VP + EP
Sbjct: 108 YMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEP 167
Query: 669 --TWVHEIFQGTLTSETRCL 722
TWVH IFQG LT+ETRCL
Sbjct: 168 IVTWVHNIFQGILTNETRCL 187
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 FGLVNFGNTCYSNSVLQALYFCRPFREKVLE-YKAKNKRTKETLLTCLADLFYSIATQKK 441
FGLVN GN+CY+N+VLQ L F RP ++ +K R K C + + I +
Sbjct: 329 FGLVNLGNSCYANAVLQCLAFTRPLISYLIRGLHSKTCRKKSWCFVC--EFEHLILKARG 386
Query: 442 KVGSIAPKKFIARLRK 489
++P K +++L+K
Sbjct: 387 GESPLSPIKILSKLQK 402
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK-AKNK---RTKETLLTCLADLFYSIATQ 435
GLVN GNTCY NS +Q L + ++ Y+ A+ K +T L +LF +
Sbjct: 160 GLVNLGNTCYMNSTMQCLISVPELKSELSNYQSARTKDVDQTSHMLTVATRELFSEL--- 216
Query: 436 KKKVGSIAPKKFIARLRKEKEEF 504
K V ++AP F L+K+ +F
Sbjct: 217 DKSVKAVAPMPFWMVLQKKYPQF 239
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSI-ATQKKK 444
GL N G TCY+NS+LQ LY FRE V + + + +L +A LF + A+QK
Sbjct: 107 GLTNLGATCYANSILQCLYMNTAFREGVFSVEV-HVLKQNPVLDQIARLFAQLHASQKSF 165
Query: 445 VGSIA 459
V S A
Sbjct: 166 VDSDA 170
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNK-----RTKETLLTCLADLFYSIAT 432
GLVN GNTCY NS +Q L + + Y + +T L +LF +
Sbjct: 105 GLVNLGNTCYMNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGEL-- 162
Query: 433 QKKKVGSIAPKKFIARLRKEKEEFDITCNKMPM 531
+ V +++P +F LRK+ +F N M M
Sbjct: 163 -DRSVNAVSPSQFWMVLRKKYPQFSQLQNGMHM 194
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 447
GL N GNTC+ NSVLQ L + P L+ A K L + + T ++
Sbjct: 108 GLQNLGNTCFLNSVLQCLTYTEPL-AATLQTAAHQKYCHVAGFCALCAIQKHVRTARQAN 166
Query: 448 GSI-APKKFIARLR 486
G I APK ++ LR
Sbjct: 167 GRILAPKDLVSNLR 180
>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1115
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 426
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 197 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 252
>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
almost identical to ubiquitin-specific protease 12
GI:11993471 [Arabidopsis thaliana], one amino acid
difference
Length = 1116
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 426
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 198 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 253
>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
strong similarity to ubiquitin-specific protease 12
(UBP12) [Arabidopsis thaliana] GI:11993471; contains
Pfam profiles PF00443: Ubiquitin carboxyl-terminal
hydrolase, PF00917: MATH domain
Length = 1115
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEY-KAKNKRTKETLLTCLADLFYSI 426
+ GL N G TCY NS+LQ LY FR+ V +N ++ L LFY +
Sbjct: 197 FVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPTASIPLALQSLFYKL 252
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/32 (56%), Positives = 19/32 (59%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 363
GL N GNTCY NSVLQ L F P L +K
Sbjct: 25 GLRNLGNTCYLNSVLQCLTFTPPLANFCLTHK 56
Score = 32.3 bits (70), Expect = 0.39
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 516 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQG 695
Q+DAHEFL ++I+ + ++L+++K + NG+ P N V EIF G
Sbjct: 114 QEDAHEFLRYVIDAC--------HNTSLRLKK------LRYNGNEPFNGNSV-VKEIFGG 158
Query: 696 TLTSETRCLT 725
L S+ +CL+
Sbjct: 159 ALQSQVKCLS 168
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVL-EYKAKNKRTKETLLTCLADLFYSIATQKKK 444
GL+N GN+C++N V Q L F P L ++ ++ KE TC + + K++
Sbjct: 543 GLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKL--VVKAKEE 600
Query: 445 VGSIAPKKFIARLR 486
++P +++L+
Sbjct: 601 KSPLSPNGLLSQLQ 614
>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
almost identical to ubiquitin-specific protease 15
GI:11993475 [Arabidopsis thaliana], 7 amino acid
difference
Length = 924
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK-AKNKRTKETLLTCLADLFYSIATQKKK 444
GLVN GN+CY+N+VLQ+L +P +L +++ K+ L C +L + ++
Sbjct: 439 GLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMC--ELEQHVMMLRES 496
Query: 445 VGSIAPKKFIARLR 486
G ++ + ++ +R
Sbjct: 497 GGPLSASRILSHMR 510
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +3
Query: 516 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQG 695
Q+DAHEFL L+ + I L ER KV P E T V +F G
Sbjct: 521 QEDAHEFLRLLVASMQSICL-ERLGGETKVD--------------PRLQETTLVQHMFGG 565
Query: 696 TLTSETRCL 722
L S+ +CL
Sbjct: 566 RLRSKVKCL 574
>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 361
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFR---EKVLE----YKAKNKRTKETLLTCLADLFYSI 426
GL N GN C+ N +LQAL C+ FR + VLE A + + L L+ L +
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQEL 134
Query: 427 ATQKKKVGSIAPKKFIARLRKEKEEFDIT 513
T + P+K + L + F++T
Sbjct: 135 GTVGSRRSVSNPRKVMVTLTDYAKNFNLT 163
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFR---EKVLE----YKAKNKRTKETLLTCLADLFYSI 426
GL N GN C+ N +LQAL C+ FR + VLE A + + L L+ L +
Sbjct: 75 GLQNLGNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQEL 134
Query: 427 ATQKKKVGSIAPKKFIARLRKEKEEFDIT 513
T + P+K + L + F++T
Sbjct: 135 GTVGSRRSVSNPRKVMVTLTDYAKNFNLT 163
>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 441
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 442 KVG--SIAPKKFIARLRKEKEEF 504
G S+AP+ F +L + +F
Sbjct: 364 SSGRNSVAPRAFKTKLARFAPQF 386
>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 910
Score = 37.1 bits (82), Expect = 0.014
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 441
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 304 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 363
Query: 442 KVG--SIAPKKFIARLRKEKEEF 504
G S+AP+ F +L + +F
Sbjct: 364 SSGRNSVAPRAFKTKLARFAPQF 386
>At4g30890.2 68417.m04387 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPF 339
GL+N GN C+ N+ LQAL C PF
Sbjct: 198 GLINAGNLCFLNATLQALLSCSPF 221
>At4g30890.1 68417.m04386 ubiquitin-specific protease 24, putative
(UBP24) identical to ubiquitin-specific protease 24
[Arabidopsis thaliana] GI:11993488
Length = 551
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPF 339
GL+N GN C+ N+ LQAL C PF
Sbjct: 198 GLINAGNLCFLNATLQALLSCSPF 221
>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 923
Score = 35.9 bits (79), Expect = 0.031
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTC--LADLFYSIATQKK 441
GL N GNTC+ NS LQ L P E L+ + + L C LA F + +
Sbjct: 305 GLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLW 364
Query: 442 KVG--SIAPKKFIARLRKEKEEF 504
G ++AP+ F +L + +F
Sbjct: 365 SSGRNAVAPRAFKTKLARFAPQF 387
>At2g32780.1 68415.m04013 ubiquitin-specific protease 1, putative
(UBP1) similar to GI:11993461
Length = 1083
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLF 417
GLVN GNTC+ NSV+Q L RE L+ ++ L++ L +LF
Sbjct: 203 GLVNLGNTCFFNSVMQNLLSLDQLREHFLK---EDLSVSGPLVSSLKELF 249
>At1g32850.1 68414.m04048 ubiquitin carboxyl-terminal hydrolase
family protein similar to ubiquitin-specific protease
UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
profile PF00443: Ubiquitin carboxyl-terminal hydrolase
Length = 892
Score = 34.7 bits (76), Expect = 0.073
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVL-EYKAK-NKRTKETLLTCLADLFYSIATQKK 441
GL N GNTC+ NS LQ L P E L +Y++ N + + LA F + +
Sbjct: 302 GLQNLGNTCFMNSTLQCLAHTPPIVEYFLQDYRSDINAKNPLGMRGELAIAFGELLRKLW 361
Query: 442 KVG--SIAPKKFIARLRKEKEEF 504
G ++AP+ F +L + +F
Sbjct: 362 SSGQNTVAPRAFKTKLARFAPQF 384
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 34.7 bits (76), Expect = 0.073
Identities = 23/79 (29%), Positives = 32/79 (40%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYKAKNKRTKETLLTCLADLFYSIATQKKKV 447
GLVN GNTC+ NS++Q L R+ L K L + L LF +
Sbjct: 232 GLVNLGNTCFFNSIMQNLLSLDRLRDHFL--KENGSGVGGPLASSLRKLFTETKPEAGLK 289
Query: 448 GSIAPKKFIARLRKEKEEF 504
I P+ F + +F
Sbjct: 290 SVINPRAFFGSFCSKAPQF 308
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 34.3 bits (75), Expect = 0.096
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 357
GL+N GN+C++N +LQ L + RP +LE
Sbjct: 169 GLMNCGNSCFANVILQCLSWTRPLVAYLLE 198
>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 672
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLE 357
GL N GN+C++N VLQ L + RP +LE
Sbjct: 175 GLTNCGNSCFANVVLQCLSWTRPLVAYLLE 204
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFR 342
GL N G+TC+ N+VLQAL P R
Sbjct: 178 GLNNLGSTCFMNAVLQALVHAPPLR 202
>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
(UBP5) similar to GI:6648604
Length = 924
Score = 32.3 bits (70), Expect = 0.39
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLE--YKAKNKRTKETLLTCLADLFYSIATQKK 441
GL+N GNTC+ NS +Q L F E ++ N + ++ LA F + +
Sbjct: 318 GLLNLGNTCFMNSAIQCLVHTPEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLW 377
Query: 442 KVG--SIAPKKFIARLRKEKEEF 504
G IAP+ F A+L + +F
Sbjct: 378 APGRTPIAPRPFKAKLARFAPQF 400
>At3g05350.1 68416.m00583 aminopeptidase P, cytosolic, putative
similar to cytosolic aminopeptidase P from [Homo
sapiens] GI:8489879, [Rattus norvegicus] GI:2760920;
contains Pfam profile PF00557: metallopeptidase family
M24
Length = 569
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 186 SSIEWAQIYHSWKEISGQSSSHLRTLFRISQFWQHLLQQL 305
S I WA+ + E+ G +SHLR ++ FW L +++
Sbjct: 241 SPISWAKAIKNDAELKGMKNSHLRDAAALAHFWAWLEEEV 280
>At3g03970.3 68416.m00418 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 567 IILAERNQST-LKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLTVR--RS 737
+ + NQ T ++ G+ + C+G N E W H+ + + +E+ C RS
Sbjct: 364 VTFGDNNQETGFVIESPRIGDQIQCSGVENGNIESVWFHQRNRSSEFNESVCSRTNRSRS 423
Query: 738 AVKMSISLITGGRGSKHEHH 797
+ + + +G SKH H
Sbjct: 424 SRRNTKKRQSGDICSKHHRH 443
>At3g03970.2 68416.m00417 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 567 IILAERNQST-LKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLTVR--RS 737
+ + NQ T ++ G+ + C+G N E W H+ + + +E+ C RS
Sbjct: 364 VTFGDNNQETGFVIESPRIGDQIQCSGVENGNIESVWFHQRNRSSEFNESVCSRTNRSRS 423
Query: 738 AVKMSISLITGGRGSKHEHH 797
+ + + +G SKH H
Sbjct: 424 SRRNTKKRQSGDICSKHHRH 443
>At3g03970.1 68416.m00416 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.68
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +3
Query: 567 IILAERNQST-LKVQKNNSGENVTCNGSVPHNTEPTWVHEIFQGTLTSETRCLTVR--RS 737
+ + NQ T ++ G+ + C+G N E W H+ + + +E+ C RS
Sbjct: 364 VTFGDNNQETGFVIESPRIGDQIQCSGVENGNIESVWFHQRNRSSEFNESVCSRTNRSRS 423
Query: 738 AVKMSISLITGGRGSKHEHH 797
+ + + +G SKH H
Sbjct: 424 SRRNTKKRQSGDICSKHHRH 443
>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
(UBP20) identical to ubiquitin-specific protease 20
GI:11993480 [Arabidopsis thaliana]
Length = 695
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQALYFCRPFREKVLEYK 363
GL N GN+C+ NSV Q P E +L ++
Sbjct: 177 GLWNLGNSCFLNSVFQCFTHTVPLIESLLSFR 208
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 262 YFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA 366
Y GLVN GN+CY + +Q ++ F + +++
Sbjct: 307 YTGLVNLGNSCYLAATMQIVFSTHSFISRYFSHQS 341
>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL 321
GL N GNTC+ NS LQ L
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
(UBP8) similar to ubiquitin-specific protease 8 partial
sequence GI:11993469 [Arabidopsis thaliana]
Length = 622
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +1
Query: 268 GLVNFGNTCYSNSVLQAL 321
GL N GNTC+ NS LQ L
Sbjct: 31 GLQNLGNTCFMNSSLQCL 48
>At4g35600.1 68417.m05057 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 419
Score = 28.7 bits (61), Expect = 4.8
Identities = 27/117 (23%), Positives = 50/117 (42%)
Frame = +1
Query: 187 PA*NGRKYITVGKRYRVRAVPTYEHYFGLVNFGNTCYSNSVLQALYFCRPFREKVLEYKA 366
P+ G I KR +V + + VNF ++++ L +CR +E +L Y+
Sbjct: 112 PSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEF 171
Query: 367 KNKRTKETLLTCLADLFYSIATQKKKVGSIAPKKFIARLRKEKEEFDITCNKMPMNS 537
K + E+ L D F K +G+ F+ L++E D + + ++S
Sbjct: 172 MPKGSLESHLFRRNDPFPWDLRIKIVIGAARGLAFLHSLQREVIYRDFKASNILLDS 228
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 624 ENVTCNGSVPHNTEPT--WVHEIFQGTLTSETRCLTVRRSAVKMSISLITGGRGSKHEHH 797
EN NG+V H ++ W + L +E CL++RR+ V I L K+ H
Sbjct: 470 ENNLKNGAVKHASDDLDIWSWTEWMEILVNEFCCLSIRRNLVDRIIELPWNPDEEKYLHR 529
Query: 798 AL 803
L
Sbjct: 530 CL 531
>At5g25250.1 68418.m02993 expressed protein
Length = 470
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 651 PHNTEPTWVHEIFQGTLTSETRCL 722
PH+ + VHE+ +G + ETR L
Sbjct: 86 PHDKDSNHVHELVEGVIEGETRVL 109
>At5g08090.1 68418.m00943 hypothetical protein
Length = 322
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 70 NNCREVLNPFVRW*KSSVCLISRKNRIANVNMSGFWP*FP 189
N E+L + W KS + +++ I V M FWP +P
Sbjct: 10 NQTLEILRLALGWTKSEIYVLTMHWLIVGVEMYLFWPLYP 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 132 YQTNTRFSPPNEGV*NFSTVISRNIINNIPFGNGEA 25
Y +N+ F+PP +GV + ST S + +P GEA
Sbjct: 235 YPSNSSFAPPLQGVLSSSTE-SEAVPQQVPAAEGEA 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,382
Number of Sequences: 28952
Number of extensions: 344629
Number of successful extensions: 906
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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