Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44920.2 68415.m05592 thylakoid lumenal 15 kDa protein, chlor...    27   2.5  
At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein, chlor...    27   2.5  
At1g69560.1 68414.m07999 myb family transcription factor (MYB105...    27   3.4  
At5g53330.1 68418.m06628 expressed protein                             27   4.4  
At3g46400.1 68416.m05030 leucine-rich repeat protein kinase, put...    26   5.9  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    26   7.7  

>At2g44920.2 68415.m05592 thylakoid lumenal 15 kDa protein,
           chloroplast identical to SP|O22160 Thylakoid lumenal 15
           kDa protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains 8 pentapeptide repeats
          Length = 224

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 167 QGGGTYPRGLTRGPTTSDYANCNFAGLTFITRCYSFTV 54
           +GGG Y +G+TRG    D +  +F+G T I + +  ++
Sbjct: 83  KGGGPYGQGVTRG---QDLSGKDFSGQTLIRQDFKTSI 117


>At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein,
           chloroplast identical to SP|O22160 Thylakoid lumenal 15
           kDa protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains 8 pentapeptide repeats
          Length = 210

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 167 QGGGTYPRGLTRGPTTSDYANCNFAGLTFITRCYSFTV 54
           +GGG Y +G+TRG    D +  +F+G T I + +  ++
Sbjct: 83  KGGGPYGQGVTRG---QDLSGKDFSGQTLIRQDFKTSI 117


>At1g69560.1 68414.m07999 myb family transcription factor (MYB105)
           contains Pfam profile: PF00249: Myb-like DNA-binding
           domain
          Length = 330

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 128 PTTSDYANCNFAGLTFITRC-YSFTVEVNREH 36
           P  SDY+NCN    T    C +S    V+R H
Sbjct: 78  PNLSDYSNCNKKDTTVYRSCGHSSKASVSRGH 109


>At5g53330.1 68418.m06628 expressed protein
          Length = 221

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 176 RNRQGGGTYPRGLTRGPTTSDYANCN 99
           RN+ GG +YPR +   P+TS   + N
Sbjct: 6   RNKSGGPSYPRPMYGPPSTSPSPSSN 31


>At3g46400.1 68416.m05030 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 883

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 184 FTAEIGRAVVPTRADSQEVLPPVITQIVILRV 89
           F  E+G+ ++  +      LPP++T I +  V
Sbjct: 324 FVCEVGKCLLELKRTQNSTLPPLLTAIEVFTV 355


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = +3

Query: 54  HGEG----ITSCNKSQTRKITICVITGGRTSCESARVGTTA 164
           HG G    +  C KS   +   CV  GG   C+S   G +A
Sbjct: 456 HGGGKRCAVPECTKSARGRTDFCVRHGGGKRCQSEGCGKSA 496


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,141,740
Number of Sequences: 28952
Number of extensions: 160329
Number of successful extensions: 300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)