Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30037
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp...   102   2e-22
At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alp...   102   2e-22
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alp...    79   3e-15
At3g44210.1 68416.m04741 hypothetical protein                          28   5.3  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   5.3  
At4g15740.1 68417.m02396 C2 domain-containing protein similar to...    27   7.0  
At3g63500.2 68416.m07153 expressed protein                             27   7.0  
At3g63500.1 68416.m07152 expressed protein                             27   7.0  
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom...    27   9.2  

>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial (PDHE1-A) identical to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}
          Length = 389

 Score =  102 bits (245), Expect = 2e-22
 Identities = 50/106 (47%), Positives = 69/106 (65%)
 Frame = +3

Query: 267 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 446
           P+  H  D  P+ S   +S++ L  +  + ++RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 39  PFTAHLCDP-PSRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEA 97

Query: 447 VAVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGC 584
           VA+GM AA+   D++ITAYR H      G S+  V SEL GR+ GC
Sbjct: 98  VAIGMEAAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGC 143


>At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial, putative similar to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 393

 Score =  102 bits (244), Expect = 2e-22
 Identities = 49/106 (46%), Positives = 69/106 (65%)
 Frame = +3

Query: 267 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 446
           P+  H L + P+ S   +SE+ L  +  +  +RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 43  PFTSH-LCESPSRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEA 101

Query: 447 VAVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGC 584
           +AVGM AA+   D++IT+YR H      G  ++   SEL GR+TGC
Sbjct: 102 LAVGMEAAITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGC 147


>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 alpha subunit GB:AAB86803 GI:2454182 from
           [Arabidopsis thaliana]; identical to cDNA pyruvate
           dehydrogenase E1 alpha subunit mRNA, nuclear gene
           encoding plastid protein GI:2454181
          Length = 428

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 39/94 (41%), Positives = 54/94 (57%)
 Frame = +3

Query: 303 TSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDA 482
           TS  +T E+ L+LYE + + R  E     +Y    + GF HLY+GQEAV+ G    +  +
Sbjct: 75  TSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKS 134

Query: 483 DSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGC 584
           DSV++ YR H      GVS   V+SEL G+ TGC
Sbjct: 135 DSVVSTYRDHVHALSKGVSARAVMSELFGKVTGC 168


>At3g44210.1 68416.m04741 hypothetical protein 
          Length = 143

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 471 MRDADSVITAYRCHGWTYLMGVSVLGVLSELTG 569
           +R ADS+   ++ H +  L+G+ + GV+ + TG
Sbjct: 9   LRVADSLSIGFKLHPYLTLIGMKLSGVIHDTTG 41


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +3

Query: 153 IPSAAKFLAGNTITKVTAPVVATNAKYSTKKEAT------FEIKPYKLHKLDQGPATSAT 314
           +PSA     G+ +T ++AP ++   + +   + T       ++   KLH  D G   S+T
Sbjct: 255 VPSADLTEKGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPVSST 312

Query: 315 LTSE 326
           +TSE
Sbjct: 313 ITSE 316


>At4g15740.1 68417.m02396 C2 domain-containing protein similar to
           cold-regulated gene SRC2 [Glycine max] GI:2055230;
           contains Pfam profile PF00168: C2 domain
          Length = 468

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
 Frame = +3

Query: 72  LLSVVLQKDH*INLGFIEIIIDKMSKLIPSAAKFLAGNT--ITKVTAPVVATNAKYSTKK 245
           L S  L+ D+ + LG + + +  +    P    F  GN   +  +T P+ AT    +T  
Sbjct: 117 LFSYWLEGDNDLYLGEVNVSVQDLLASNP-IPPFTNGNINKMKSMTCPIKATEKSTNTTV 175

Query: 246 EATFEIKPYKLHKL-----DQGPATSATLTSE-DALKLYEQLTILRRIETASGNLYKEKI 407
             ++  KP  + +      D  P+    +  + D  KL + L    R +  +  L  E +
Sbjct: 176 SLSYRFKPVPVEEFYPPSPDSLPSIGKPVYRDLDPAKLSQPLVFSPRFQATTTKLILELV 235

Query: 408 IR 413
           I+
Sbjct: 236 IK 237


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 244  KRRHSKSSPTNSINWIRAL-QHQPHSLLK 327
            K RH + SP+    W+R++    PH+ LK
Sbjct: 994  KPRHERGSPSQDTAWLRSVCSDNPHNQLK 1022


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 244 KRRHSKSSPTNSINWIRAL-QHQPHSLLK 327
           K RH + SP+    W+R++    PH+ LK
Sbjct: 719 KPRHERGSPSQDTAWLRSVCSDNPHNQLK 747


>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 728

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 132 IDKMSKLIPSAAKFLAGNTITKVTAPVVATNA-KYSTKKEAT-FEIKPYKLHKLDQGPAT 305
           I K    + +  KFL+   +++    V   N    S K +A   E+K   +HK+ +    
Sbjct: 652 IRKNKSCVNAVLKFLSPEHVSESIKRVKELNQLPQSVKSKANKIEVKKMAIHKISEAVKE 711

Query: 306 SATLTSED---ALKLY 344
              LTS D   AL+LY
Sbjct: 712 IRELTSSDSTGALRLY 727


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,527
Number of Sequences: 28952
Number of extensions: 230572
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)