Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30036
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    33   0.19 
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER...    31   0.76 
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta...    30   1.8  
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta...    30   1.8  
At3g46140.1 68416.m04993 protein kinase-related contains eukaryo...    30   1.8  
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea...    29   2.3  

>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 272 EALARHLPCYNGTKSETFTQPSTTIQSFNSIGVQDEHTDINFYRYTY 132
           EA+A ++ C NGTK    T   +T++SF  +  Q      N  R  Y
Sbjct: 16  EAVAVNIRCSNGTKFSVKTSLDSTVESFKELVAQSSDVPANQQRLIY 62


>At2g17190.1 68415.m01985 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 538

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 269 ALARHLPCYNGTKSETFTQPSTTIQSFNSIGVQDEHTDINFYRYTY 132
           A+A ++ C NGTK    T   +T++SF  +  Q+     N  R  Y
Sbjct: 17  AVAVNVRCSNGTKFSVTTSLDSTVESFKELIAQNSDVPANQQRLIY 62


>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIW 49
           G A+ TGSWDS L+IW
Sbjct: 291 GSALCTGSWDSNLKIW 306


>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
           subunit (GB1) / GTP-binding protein beta subunit (AGB1)
           / transducin contains 7 WD-40 repeats (PF00400);
           identical to Guanine nucleotide-binding protein beta
           subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
           al, PNAS 91:9954 (1994)
          Length = 377

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 2   GMAVATGSWDSFLRIW 49
           G A+ TGSWDS L+IW
Sbjct: 353 GSALCTGSWDSNLKIW 368


>At3g46140.1 68416.m04993 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = -1

Query: 227 ETFTQPSTTIQSFNSIGVQDEHTDINFYRYTYIDGSMFD*SCDIXXXXXXXXXXCEMFSS 48
           +T+    T ++      V  EH+D+    +  + G     SC I           + F S
Sbjct: 292 DTWAFGCTVLEMLTGQQVWGEHSDLGSVDWDILIGQ----SCYIPYIPDWLSEEAQHFLS 347

Query: 47  RCAGRSPRSRW 15
           RC  R P SRW
Sbjct: 348 RCLKRDPASRW 358


>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400) (1
           weak); similar to Hypothetical RAE1-like
           protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
           mRNA-associated protein mrnp 41 ((mRNA export protein)
           (GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
           [Homo sapiens]
          Length = 349

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 11  VATGSWDSFLRIWN*TSHTNKHLNTHPNICRMIS 112
           +ATGSWD  L+ W+       H    P+ C  +S
Sbjct: 129 LATGSWDKTLKYWDTRQQNPVHTQQLPDKCYTLS 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,247
Number of Sequences: 28952
Number of extensions: 250661
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)