Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30035
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51910.2 68418.m06440 TCP family transcription factor, putati...    28   6.1  
At5g51910.1 68418.m06439 TCP family transcription factor, putati...    28   6.1  
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic...    28   6.1  
At3g12050.2 68416.m01497 Aha1 domain-containing protein contains...    27   8.1  
At3g12050.1 68416.m01496 Aha1 domain-containing protein contains...    27   8.1  

>At5g51910.2 68418.m06440 TCP family transcription factor, putative
           similar to PCF2 [(GI:2580440) Oryza sativa]
          Length = 293

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  RPKPRPKSRPADLPRHRLVQDQRIQIRLPVHC 154
           + KP PK RP    RH  V+ +  +IR+P  C
Sbjct: 47  KTKPAPK-RPTSKDRHTKVEGRGRRIRMPAGC 77


>At5g51910.1 68418.m06439 TCP family transcription factor, putative
           similar to PCF2 [(GI:2580440) Oryza sativa]
          Length = 293

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  RPKPRPKSRPADLPRHRLVQDQRIQIRLPVHC 154
           + KP PK RP    RH  V+ +  +IR+P  C
Sbjct: 47  KTKPAPK-RPTSKDRHTKVEGRGRRIRMPAGC 77


>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
           to heat shock protein 101 GI:6715468 GB:AAF26423 from
           [Arabidopsis thaliana]
          Length = 911

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 113 VQDQRIQIRLPVHC-PNERDRISGARSAELRVHIRDIRE 226
           ++ +R+Q+ + +H    E+D+ S AR  E+R  + D+R+
Sbjct: 416 LERKRMQLEIELHALEREKDKASKARLIEVRKELDDLRD 454


>At3g12050.2 68416.m01497 Aha1 domain-containing protein contains
           Pfam PF05146: Aha1 domain; similar to Protein C14orf3
           (HSPC322) (Swiss-Prot:O95433) [Homo sapiens]
          Length = 321

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 NGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGKY 362
           +G  P+V +  V  K VK K K++   GF  T+T+  K+
Sbjct: 156 SGAAPVVSAAAVESKVVKEKKKAKTKEGFK-TITMTEKF 193


>At3g12050.1 68416.m01496 Aha1 domain-containing protein contains
           Pfam PF05146: Aha1 domain; similar to Protein C14orf3
           (HSPC322) (Swiss-Prot:O95433) [Homo sapiens]
          Length = 360

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 246 NGGYPIVKSGGVGQKFVKLKLKSQRGHGFNFTVTIYGKY 362
           +G  P+V +  V  K VK K K++   GF  T+T+  K+
Sbjct: 195 SGAAPVVSAAAVESKVVKEKKKAKTKEGFK-TITMTEKF 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,261
Number of Sequences: 28952
Number of extensions: 228659
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)