SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30027
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putati...    29   0.54 
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate...    29   0.94 
At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    29   0.94 
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote...    27   3.8  
At3g09400.1 68416.m01116 protein phosphatase 2C family protein /...    27   3.8  
At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase, puta...    26   6.7  
At1g33930.1 68414.m04205 avirulence-responsive family protein / ...    26   6.7  
At1g33830.1 68414.m04187 avirulence-responsive family protein / ...    26   6.7  
At5g45275.1 68418.m05557 expressed protein Requires functional a...    25   8.8  
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu...    25   8.8  
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati...    25   8.8  
At1g33870.1 68414.m04199 avirulence-responsive protein, putative...    25   8.8  
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu...    25   8.8  

>At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 968

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 267 CHTYQLE-VWDSRYIMRLRPHVSKLTMRHSLS 175
           C  Y L+ + D+ Y + LRPH+SK  M+ S S
Sbjct: 901 CQAYTLKRIRDANYNVTLRPHISKEIMQSSKS 932


>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
           very low similarity to SP|Q9UUA2 DNA repair and
           recombination protein pif1, mitochondrial precursor
           {Schizosaccharomyces pombe}; weak hit to Pfam profile
           PF02178: AT hook motif
          Length = 1752

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 277 LPQMSYVSVRSLGQPLYNETSTSCLKAHHETFIINE 170
           LP M   S    G+   NE++TSC+  H +T +  E
Sbjct: 123 LPSMGLSSATGKGKASQNESTTSCMFFHKQTTLQTE 158


>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 111 IKGSVDGKSPTHWSDVMVKELKVPMSKNQSE 19
           + GSVDG +   WSD +  + K+ M +   E
Sbjct: 136 VNGSVDGSNDERWSDTLSSDKKLYMEETSVE 166


>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 999

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 12/58 (20%)
 Frame = +2

Query: 44  TLSSLTITSDQCVGLLPSTL----PLIFQDY--------LTASISGYRKLDNIIFIDN 181
           TLS L + +++  G+LPS L    PL + D         + A++ G  KL+ +I IDN
Sbjct: 332 TLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEIPANVCGEGKLEYLILIDN 389



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 17  SSD*FFDIGTLSSLTITSDQCVGLLPSTLPLIFQDYLTASISGYRKLDNI 166
           S+D F     L SL ++ +  VG +P +LP    +     ISG    D I
Sbjct: 106 SADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTI 155


>At3g09400.1 68416.m01116 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 650

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 258 YQLEVWDSRYIMRLRPHVSKLTMRHSL 178
           Y + V DSR ++  RP+V K+ M+  L
Sbjct: 423 YVMSVGDSRAVLARRPNVEKMKMQKEL 449


>At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase,
           putative / long-chain acyl-CoA synthetase, putative
           similar to GI:1617270 (MF7P) from [Brassica napus]
          Length = 665

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  LTVYTALNFSRLSDRQHIRLPEVRQHNI 171
           LT+Y+   F +L + +H  LPE R+ ++
Sbjct: 198 LTIYSWDQFLKLGEGKHYELPEKRRSDV 225


>At1g33930.1 68414.m04205 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
           Pfam profile PF04548: AIG1 family
          Length = 336

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 213 VEVSLYNGCPKLLTDTYDICGSNTVL 290
           +E  L NGCP+ L +   +CG   V+
Sbjct: 173 LEDYLSNGCPEFLKNVLRLCGGRRVV 198


>At1g33830.1 68414.m04187 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           AIG1 protein SP:P54120 (Arabidopsis thaliana); contains
           Pfam profile: PF00735 cell division protein (members of
           this family bind GTP)
          Length = 225

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 225 LYNGCPKLLTDTYDICGSNTVL 290
           L  GCP+ LT    +CG   VL
Sbjct: 150 LREGCPEFLTRVLKLCGGRKVL 171


>At5g45275.1 68418.m05557 expressed protein Requires functional
           assignment.
          Length = 570

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 167 LCCLTSGSRICW 132
           LCCL +G  ICW
Sbjct: 106 LCCLLAGLSICW 117


>At4g19450.1 68417.m02861 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 572

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 167 LCCLTSGSRICW 132
           LCCL +G  ICW
Sbjct: 106 LCCLLAGLSICW 117


>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
           / PEP carboxylase, putative (PPC1) strong similarity to
           SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
           (PEPCASE) {Solanum tuberosum}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 967

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 267 CHTYQLE-VWDSRYIMRLRPHVSK 199
           C  Y L+ + D  Y + LRPH+SK
Sbjct: 900 CQAYTLKRIRDPSYHVTLRPHISK 923


>At1g33870.1 68414.m04199 avirulence-responsive protein, putative /
           avirulence induced gene protein, putative / AIG protein,
           putative similar to SP|P54120 AIG1 protein {Arabidopsis
           thaliana}; contains Pfam profile PF04548: AIG1 family
          Length = 252

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 234 GCPKLLTDTYDICGSNTVL 290
           GCPK LT    +CG   V+
Sbjct: 121 GCPKFLTGVLRLCGGRKVV 139


>At1g31470.1 68414.m03853 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 546

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 167 LCCLTSGSRICW 132
           LCCL +G  ICW
Sbjct: 106 LCCLLAGLSICW 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,412,006
Number of Sequences: 28952
Number of extensions: 112419
Number of successful extensions: 253
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -