Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30024
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60550.1 68416.m06773 cyclin family protein similar to cyclin... 29 2.2
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 29 2.2
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 29 2.2
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 29 2.2
At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21... 28 5.1
At4g03080.1 68417.m00416 kelch repeat-containing serine/threonin... 28 5.1
At5g23230.1 68418.m02717 isochorismatase hydrolase family protei... 27 6.8
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 27 6.8
At1g43570.1 68414.m05001 hypothetical protein 27 9.0
>At3g60550.1 68416.m06773 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 230
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 408 NPNY-VAAAAPSELFLVSLMVGNKFLQDDGEDDEVICSEWAASGGMELKQLKKLEIE 575
NP + ++ L + ++M+ +K+++D + S +A GG+E + L KLE+E
Sbjct: 109 NPGFRISLTNVHRLLITTIMIASKYVEDLNYRN----SYFAKVGGLETEDLNKLELE 161
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 182 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 33
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 182 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 33
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 182 KLFMITHALGLGP*PFPSSF*YIRHYNSPINLYSYS*MFFPWYIYITNIY 33
++ M T G GP P P + + + P+NL+ YS + + TN+Y
Sbjct: 112 RVMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLY 161
>At5g64800.1 68418.m08148 CLE21, putative CLAVATA3/ESR-Related 21
(CLE21)
Length = 106
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 108 MSNISKRRREGSRSKTKGMGDHKEFLKRITKT 203
MSN +K RR SR + K GD +E KR T
Sbjct: 67 MSNFNKVRRRSSRFRRKTDGDEEEEEKRSIPT 98
>At4g03080.1 68417.m00416 kelch repeat-containing serine/threonine
phosphoesterase family protein contains Pfam profiles:
PF00149 calcineurin-like phosphoesterase, PF01344 kelch
motif
Length = 881
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 552 ASVPYPQRQPTRSKSPHRLHHRLVGIYYLP 463
+ VP P ++ TR KSP LH +++ P
Sbjct: 508 SDVPQPTKKFTRQKSPQGLHKKVIAALLRP 537
>At5g23230.1 68418.m02717 isochorismatase hydrolase family protein
low similarity to SP|P45743 Isochorismatase (EC 3.3.2.1)
(2,3 dihydro-2,3 dihydroxybenzoate synthase)
(Superoxide-inducible protein 1) (SOI1) {Bacillus
subtilis}; contains Pfam profile PF00857:
isochorismatase family protein
Length = 198
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 275 VFFTTRSFTAPTARGLVGEYGPGSL 349
VFFT + +PT G++GE+ G L
Sbjct: 57 VFFTRHNHKSPTDHGMLGEWWNGDL 81
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 537 PQRQPTRSKSPHRLHHRLVGIYYLPSKTQGRVQRVQ 430
P R+P +S +L RL Y+LPSK + ++ + Q
Sbjct: 33 PSRKPPKSSLSQQLL-RLDDSYFLPSKHESKISKTQ 67
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 237 GTEVKAAARSIGSL*CASKTLYDHPCPWSWTLTLPVVF 124
GTE K+ + L ++KTL+ +S T+T P+ F
Sbjct: 308 GTECKSGTAKLTLLAFSAKTLWKQEITYSSTVTTPIKF 345
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,691
Number of Sequences: 28952
Number of extensions: 260023
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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