Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30035
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   135   2e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   135   2e-32
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   135   2e-32

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  135 bits (327), Expect = 2e-32
 Identities = 61/83 (73%), Positives = 70/83 (84%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           I+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNK +VK  GKD FH+R+R+H
Sbjct: 33  IYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVLRINKMLSCAGADRLQTGM 115



 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 44/85 (51%), Positives = 51/85 (60%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           AFGK  GT  RV  GQ ++SVR  D       EALRRAKFKFPGRQK  VS  WG TK+ 
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177

Query: 437 RDEFEKLREEGRLANDGXIVQYRPN 511
           R E+ KLR   R+  DG   ++  N
Sbjct: 178 RAEYTKLRAMKRIVPDGVNAKFLSN 202


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  135 bits (327), Expect = 2e-32
 Identities = 61/83 (73%), Positives = 70/83 (84%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           I+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNK +VK  GKD FH+R+R+H
Sbjct: 33  IYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVLRINKMLSCAGADRLQTGM 115



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 44/77 (57%), Positives = 50/77 (64%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           AFGK  GT  RV  GQ ++SVR  D       EALRRAKFKFPGRQK  VS  WG TK+ 
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177

Query: 437 RDEFEKLREEGRLANDG 487
           R +F KLR+E R+  DG
Sbjct: 178 RADFTKLRQEKRVVPDG 194


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  135 bits (326), Expect = 2e-32
 Identities = 61/83 (73%), Positives = 70/83 (84%)
 Frame = +3

Query: 3   IFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKXLVKXXGKDQFHIRMRLH 182
           I+D+G KR  VD+FP CVHLVS E E +SSEALEA RI CNK +VK  GKD FH+R+R+H
Sbjct: 33  IYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVH 92

Query: 183 PFHVIRINKMLSCAGADRLQTGM 251
           PFHV+RINKMLSCAGADRLQTGM
Sbjct: 93  PFHVLRINKMLSCAGADRLQTGM 115



 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 43/77 (55%), Positives = 50/77 (64%)
 Frame = +2

Query: 257 AFGKPQGTVXRVRXGQPIMSVRSSDRWXAQVIEALRRAKFKFPGRQKXYVSXXWGXTKYX 436
           AFGK  GT  RV  GQ ++SVR  D       EALRRAKFKFPGRQK  VS  WG TK+ 
Sbjct: 118 AFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177

Query: 437 RDEFEKLREEGRLANDG 487
           R ++ KLR+E R+  DG
Sbjct: 178 RADYTKLRQEKRIVPDG 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,924
Number of Sequences: 28952
Number of extensions: 210496
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)