Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30001
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 70 2e-12
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 70 2e-12
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 67 1e-11
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 31 1.0
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.8
At2g27270.1 68415.m03277 expressed protein 30 1.8
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa... 28 7.4
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +3
Query: 252 NVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 431
+ P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 432 LPSGLLLVTGPFAFNSCPLRRIPQ 503
L SGLLLVTGPF N PLRR+ Q
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQ 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 479 VPATPYSSALVIGTSTRISLGNFKLPKHFNDDYF 580
VP + A VIGTST++ + L K F+D YF
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 69.7 bits (163), Expect = 2e-12
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +3
Query: 252 NVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 431
+ P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 432 LPSGLLLVTGPFAFNSCPLRRIPQ 503
L SGLLLVTGPF N PLRR+ Q
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQ 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 479 VPATPYSSALVIGTSTRISLGNFKLPKHFNDDYF 580
VP + A VIGTST++ + L K F+D YF
Sbjct: 129 VPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/84 (42%), Positives = 52/84 (61%)
Frame = +3
Query: 252 NVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 431
+ P+++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 432 LPSGLLLVTGPFAFNSCPLRRIPQ 503
L SGLLLVTGPF N PLRR+ Q
Sbjct: 113 LSSGLLLVTGPFKINGVPLRRVNQ 136
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 479 VPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKE- 655
VP + A VIGTST+I + K F+D YF EG+ A K+E
Sbjct: 129 VPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKKKTEGEFFEAEKEEK 184
Query: 656 KYVPI*AAQNRSEDSST 706
K +P Q + ED T
Sbjct: 185 KEIP----QEKKEDQKT 197
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 488 TPYSSALVIGTSTRISLGNFKLPK 559
+PY ++ GT TR SLG F +PK
Sbjct: 244 SPYHRVMMTGTETRYSLGLFSIPK 267
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 258 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 347
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +3
Query: 249 QNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 428
+N P +R+ PT++K A G SKH R + + + C+ GK ++ G
Sbjct: 11 KNGPTTKREE--PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFG 61
Query: 429 ILPSGLLLVTGPFAFNSCPLR-RIPQ 503
+ + +LL+ FAFN ++ R+P+
Sbjct: 62 VPAALILLIICVFAFNYIAIQPRVPR 87
>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
PF03479: Domain of unknown function (DUF296); contains
Pfam PF02178: AT hook motif;
Length = 439
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 642 PQKKRNTFPSEQRKTDQKTVRR-GFDSKPS 728
PQ+ + P Q++ DQKT+ GFD PS
Sbjct: 82 PQQHQYHHPQPQQQIDQKTLESLGFDGSPS 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,265,959
Number of Sequences: 28952
Number of extensions: 308251
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -