Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00032
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo... 56 7e-09
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi... 56 7e-09
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C) 56 1e-08
At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase... 31 0.37
At4g35500.2 68417.m05045 protein kinase family protein contains ... 29 1.5
At4g35500.1 68417.m05044 protein kinase family protein contains ... 29 1.5
At5g26670.2 68418.m03173 pectinacetylesterase, putative similar ... 28 2.0
At5g26670.1 68418.m03172 pectinacetylesterase, putative similar ... 28 2.0
At3g05910.1 68416.m00666 pectinacetylesterase, putative similar ... 28 2.0
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ... 26 8.0
>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
ribosomal protein S28, Arabidopsis thaliana,
EMBL:ATRP28A
Length = 64
Score = 56.4 bits (130), Expect = 7e-09
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2
Query: 53 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVRE 47
>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
to ribosomal protein S28 GB:P34789 [Arabidopsis
thaliana]
Length = 64
Score = 56.4 bits (130), Expect = 7e-09
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2
Query: 53 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVRE 47
>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
Length = 64
Score = 55.6 bits (128), Expect = 1e-08
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2
Query: 53 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVRE 47
>At2g43890.1 68415.m05456 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 392
Score = 30.7 bits (66), Expect = 0.37
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 226 VQIQEE*GCLVTDGSFHVSDDLTAGLPNELDLHLSTL 116
+ +Q G VTDG+FH DD + P +L++S L
Sbjct: 199 LHVQGSAGVTVTDGTFHTGDDCISIGPGTRNLYMSKL 235
>At4g35500.2 68417.m05045 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 439
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 29 LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 172
LS+ +DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 87 LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134
>At4g35500.1 68417.m05044 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 438
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 29 LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 172
LS+ +DK + R++ +G GQ + +EF+G++ ++IR
Sbjct: 86 LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133
>At5g26670.2 68418.m03173 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 298
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 107 SQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFLN 220
+ G+CT ++ F+ Q++R V G + + LF+N
Sbjct: 201 NHGRCTPAQIRFLQGFRNQMLRAVSGFSNSKKNGLFIN 238
>At5g26670.1 68418.m03172 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 416
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 107 SQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFLN 220
+ G+CT ++ F+ Q++R V G + + LF+N
Sbjct: 319 NHGRCTPAQIRFLQGFRNQMLRAVSGFSNSKKNGLFIN 356
>At3g05910.1 68416.m00666 pectinacetylesterase, putative similar to
pectinacetylesterase precursor GI:1431629 from [Vigna
radiata]
Length = 415
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 107 SQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFLN 220
+ G+CT ++ F+ Q++R VKG + LF+N
Sbjct: 318 NHGKCTPAQLRFLQGFREQMLRVVKGFSMSRQNGLFIN 355
>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 418
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 134 PSLEYTGPENLYGQALSRHEQERWVYPFWLVISS 33
P ++ E +G+A E+ERW+ + VI S
Sbjct: 134 PEEDFDPQEENFGEAAPSSEEERWLAQYGQVIES 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,137,253
Number of Sequences: 28952
Number of extensions: 146441
Number of successful extensions: 347
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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