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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00019
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    78   2e-15
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    78   3e-15
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    77   4e-15
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    77   4e-15
At1g50890.1 68414.m05722 expressed protein                             29   1.6  
At4g10800.1 68417.m01760 expressed protein predicted proteins, A...    27   6.3  
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    26   8.3  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    26   8.3  
At3g47920.1 68416.m05225 hypothetical protein similar to zinc fi...    26   8.3  
At3g28010.1 68416.m03497 hypothetical protein contains Pfam prof...    26   8.3  
At1g21660.1 68414.m02711 expressed protein low similarity to SP|...    26   8.3  
At1g19715.1 68414.m02461 jacalin lectin family protein similar t...    26   8.3  

>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 39/94 (41%), Positives = 54/94 (57%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLP 285
               +  R IWGKVTRPHGNSG V  S   ++LP
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVR-SKFTSNLP 94



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       R+KF SNLP ++MG R+RV +YPS I
Sbjct: 70  CIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 77.8 bits (183), Expect = 3e-15
 Identities = 39/94 (41%), Positives = 54/94 (57%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKK------ 63

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLP 285
               +  R IWGKVTRPHGNSG V  S   ++LP
Sbjct: 64  --NGSHYRCIWGKVTRPHGNSGVVR-SKFTSNLP 94



 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       R+KF SNLP ++MG R+RV +YPS I
Sbjct: 70  CIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111


>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 36/84 (42%), Positives = 49/84 (58%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKK------ 64

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
               +  R IWGKVTRPHGNSG V
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVV 86



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       RAKF SNLP ++MG R+RV +YPS I
Sbjct: 71  CIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 37/84 (44%), Positives = 48/84 (57%)
 Frame = +1

Query: 4   RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           RLY +    GYKR   NQ+ NT+L++VEG     +  +Y GK   Y+Y+AK +       
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKK------ 64

Query: 184 RGKKTKLRAIWGKVTRPHGNSGSV 255
               +  R IWGKVTRPHGNSG V
Sbjct: 65  --NGSHYRCIWGKVTRPHGNSGVV 86



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +3

Query: 207 CYLGQGDPPTWQLWQCRAKFKSNLPAQAMGHRIRVMLYPSRI 332
           C  G+   P       RAKF SNLP ++MG R+RV +YPS I
Sbjct: 71  CIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112


>At1g50890.1 68414.m05722 expressed protein
          Length = 821

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 156 EEDTNSRRSPWQKNQAACYLGQGDPPTWQLWQCRAKFKSNLPA 284
           E+  NSRR+ W K+  A  LG+G P    +WQ  +K ++ L A
Sbjct: 600 EQSGNSRRA-WDKSSVAIRLGEG-PSARSVWQA-SKDEATLEA 639


>At4g10800.1 68417.m01760 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 283

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 187 GKKTKLRAIWGKVTRPHGNSGSVEPSSSLTSLPRLW 294
           G K KL  + GK+    G    + PS S T L ++W
Sbjct: 149 GVKVKLVEVTGKILEAVGYGIVIVPSKSRTCLLKIW 184


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 136 VYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 252
           ++V R K +TPI    R  +  ++ IW  V +P  +  +
Sbjct: 167 LFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNT 205


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 61  ENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIP 174
           +N  L   E  +++N  V Y G   +  Y +KKR P P
Sbjct: 659 QNLYLGDKEREQEQNAMVLYKGDGALVPYESKKRKPRP 696


>At3g47920.1 68416.m05225 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 300

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 193 FCHGDLRELVSSS*LCTHRRNACQHK-RLHHYG 98
           F +  LR + SS    TH RN C ++ RL +YG
Sbjct: 125 FQYERLRRICSSCFRVTHHRNYCPYRPRLPNYG 157


>At3g28010.1 68416.m03497 hypothetical protein contains Pfam profile
           PF03778: Protein of unknown function (DUF321)
          Length = 261

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
 Frame = +1

Query: 43  GLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGK 222
           GLR   EN     + G        F AGK  VYV   K R  + G   GK T LR  W +
Sbjct: 89  GLRFWRENHGFTFLAGKSQVYRFKFLAGKLRVYVSAGKSRVNVFG---GKITGLR-FWRE 144

Query: 223 ---VTRPHGNSGSVEPSSSLTSLPRLWDTEYE*CCILPGSKNLLL 348
               T   G S  +     +TSL R W   +     L G   +L+
Sbjct: 145 NHGFTFLVGKSQVLVFGGKITSL-RFWQENHR-FMFLAGKSQVLV 187


>At1g21660.1 68414.m02711 expressed protein low similarity to
           SP|O14976 Cyclin G-associated kinase (EC 2.7.1.-) {Homo
           sapiens}; supporting cDNA gi|20466222|gb|AY099577.1|
          Length = 523

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 207 TQLGFFATGTSGNWCPLLSSVHI 139
           T++  +ATG  GN   LLSS+HI
Sbjct: 430 TEIRRWATGKEGNMRALLSSLHI 452


>At1g19715.1 68414.m02461 jacalin lectin family protein similar to
           agglutinin [Castanea crenata] GI:25528883; contains Pfam
           profile PF01419: Jacalin-like lectin domain
          Length = 595

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 58  HENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 183
           H N+   ++E +   N  V  A  H   V R   + P P GP
Sbjct: 394 HNNSGTAQIENSPWANKLVLAANGHGEEVDRGVVKEPTPSGP 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,878,895
Number of Sequences: 28952
Number of extensions: 191102
Number of successful extensions: 566
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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