Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00001
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 93 1e-19
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 36 0.016
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 36 0.016
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 36 0.016
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 30 1.1
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 29 1.9
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 1.9
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 2.4
At5g39970.1 68418.m04847 expressed protein low similarity to up-... 29 3.2
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 29 3.2
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l... 28 4.3
At1g08980.1 68414.m01001 amidase family protein similar to compo... 28 4.3
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 28 5.7
At4g12310.1 68417.m01949 cytochrome P450, putative similar to P4... 28 5.7
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 28 5.7
At5g05100.1 68418.m00541 expressed protein 27 7.5
At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5) i... 27 7.5
At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5) i... 27 7.5
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 27 9.9
At1g11940.1 68414.m01380 expressed protein contains Pfam profile... 27 9.9
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 93.5 bits (222), Expect = 1e-19
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Frame = +2
Query: 344 QGNGLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALG-NL*WQG 520
+G LNLE +NVG+VVFG D IKEGD+VKRTG+IVDVP G+ +LGRVVDA+G + +G
Sbjct: 332 KGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKG 391
Query: 521 TIDTKSRMRVGIKAPGII 574
+ + RV +KAPGI+
Sbjct: 392 ALSDHEQRRVEVKAPGIL 409
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 291 YGLKNIQAEEMVEFSSGLKGMAL 359
YGL IQA EMV F++G+KGMAL
Sbjct: 314 YGLNEIQAGEMVLFANGVKGMAL 336
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTIDTKSRMRVGIK 559
+ + G + L++ G V TGA + VPVG LGR+++ LG + +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 560 APGII 574
AP ++
Sbjct: 195 APALV 199
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTIDTKSRMRVGIK 559
+ + G + L++ G V TGA + VPVG LGR+++ LG + +G I T+ + +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 197
Query: 560 APGII 574
AP ++
Sbjct: 198 APALV 202
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 383 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN-L*WQGTIDTKSRMRVGIK 559
+ + G + L++ G V TGA + VPVG LGR+++ LG + +G I T+ + +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRD 194
Query: 560 APGII 574
AP ++
Sbjct: 195 APALV 199
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 150 LENYMSQPPTKLPRSPPSSKRGSLEPRPRLI*KRLS 257
L++YM P T+L RGSLE +P+ I K+ S
Sbjct: 1168 LDSYMEGPSTRLRVRHQKPSRGSLETKPKKIGKKRS 1203
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 327 PPSPQPGCSSSHNTSDTITNAQDTTVSS--RSALGAAPRILS 208
PPSP SSSH ++ I + T+ SS SA G A R ++
Sbjct: 13 PPSPASSTSSSHLSNRLIPRSNSTSASSLITSAAGIASRSMT 54
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 386 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 490
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 87 GACLMLLPRCQRWRYPQWPWHLENYMSQPPTKLPRSPP-SSKRGSLEPRPR 236
G+ ++ +PR +R W ++ PP +P PP R + P PR
Sbjct: 495 GSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPR 545
>At5g39970.1 68418.m04847 expressed protein low similarity to
up-regulated by thyroid hormone in tadpoles; expressed
specifically in the tail and only at metamorphosis;
membrane bound or extracellular protein; C-terminal
basic region [Xenopus laevis] GI:1234787
Length = 690
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 150 LENYMSQPPTKLP-RSPPSS 206
LEN S PP+K P RSPPSS
Sbjct: 645 LENTTSSPPSKQPDRSPPSS 664
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -3
Query: 526 DCPLPS*VSQSVYYTPKDLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVR 368
+C L V +Y KDL S + L+ I F D+L++ + H H+++
Sbjct: 349 ECILREEVPSPMYL--KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
similarity to SP|O13833| Caffeine-induced death protein
1 {Schizosaccharomyces pombe}; contains Pfam profiles
PF03828: PAP/25A associated domain, PF01909:
Nucleotidyltransferase domain
Length = 764
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 342 GLRRTPPSPQPGCSSSHNTSDTITNAQD 259
GL+ TPP P PG SS+ D ++D
Sbjct: 233 GLKSTPPPPPPGFSSNQRGWDMSLGSKD 260
>At1g08980.1 68414.m01001 amidase family protein similar to
component of chloroplast outer membrane translocon Toc64
[Pisum sativum] GI:7453538; contains Pfam profile
PF01425: Amidase; supporting cDNA
gi|11493701|gb|AF202077.1|AF202077
Length = 425
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 288 TSDTITNAQDTTVSSRSALGAAPRILSSRMVEISAALWV 172
TSD +T Q+ + S AL ++ R+L +I+ W+
Sbjct: 259 TSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWI 297
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 315 QPGCSSSHNTSDTI-TNAQDTTVSSRSALGAAPRILSSRMVEISAALW 175
Q G S N + TI +AQD VSS S + P +L++ ++ S LW
Sbjct: 385 QSGSDSDLNPTYTIQAHAQDRGVSSISYNISTPNLLATGSMDKSVKLW 432
>At4g12310.1 68417.m01949 cytochrome P450, putative similar to P450
monooxygenase GI:14334057 from [Gossypium arboreum ]
Length = 383
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 455 VPVGEQILGRVVDALGNL*WQGTIDTKSRMRVGIKAPGII 574
V VGEQ+ +++ + N+ W G++ + VG + G+I
Sbjct: 44 VNVGEQLFLTMMNLMMNMLWGGSVKAEDMESVGTEFKGVI 83
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 87 GACLMLLPRCQRWRYPQWPWHLENYMSQPPTKLPRSPP-SSKRGSLEPRPR 236
G+ ++ PR +++ W ++ PP LP PP R P PR
Sbjct: 548 GSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPR 598
>At5g05100.1 68418.m00541 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 333 RTPPSPQPGCSSSHNTSDTITNAQDTTVSSRS 238
R PP P P S HNT+ N + V+ S
Sbjct: 177 RAPPPPYPRLDSKHNTACPSRNETEVVVNYNS 208
>At4g23140.2 68417.m03338 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 680
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 39 CEKCR*SPLVLLAL*PGACLMLLPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRGS 218
C C S + +AL + P C RY +P++ E+ + PP P PP +
Sbjct: 211 CLSCLQSSINGMALSRIGARLYWPSCTA-RYELYPFYNESAIETPPLPPPPPPPPPRESL 269
Query: 219 LEPRP 233
+ P
Sbjct: 270 VSTPP 274
>At4g23140.1 68417.m03337 receptor-like protein kinase 5 (RLK5)
identical to receptor-like protein kinase 5 [Arabidopsis
thaliana] GI:13506747; contains Pfam domain PF00069:
Protein kinase domain; identical to cDNA receptor-like
protein kinase 5 (RLK5) GI:13506746
Length = 674
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 39 CEKCR*SPLVLLAL*PGACLMLLPRCQRWRYPQWPWHLENYMSQPPTKLPRSPPSSKRGS 218
C C S + +AL + P C RY +P++ E+ + PP P PP +
Sbjct: 211 CLSCLQSSINGMALSRIGARLYWPSCTA-RYELYPFYNESAIETPPLPPPPPPPPPRESL 269
Query: 219 LEPRP 233
+ P
Sbjct: 270 VSTPP 274
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1568
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -2
Query: 329 LHHLLSL---DVLQAITRAIPSPMLKTR-QSLLDQPWARLQGSSLRGWWRSRQ 183
+HH++ + +VL + +P R LL PW L S+ W RSRQ
Sbjct: 358 MHHIVQVHMGNVLPKMQMVLPQSFDTERIDMLLTSPWKPLDLSAAVKWLRSRQ 410
>At1g11940.1 68414.m01380 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 383
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 400 ITKYYHTHIVRFQVKAIPLRPEENSTISSAWM 305
+ + HT R+ VK P+ PEE S W+
Sbjct: 191 VDSFLHTKETRYSVKMSPVIPEEKWRKGSQWI 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,896
Number of Sequences: 28952
Number of extensions: 292733
Number of successful extensions: 953
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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