SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D13
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor...    33   0.14 
At1g64820.1 68414.m07349 MATE efflux family protein similar to r...    32   0.25 
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    31   0.33 
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa...    28   3.0  
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin...    28   4.0  
At3g23880.1 68416.m03001 F-box family protein contains F-box dom...    27   5.3  
At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    27   5.3  
At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative...    27   5.3  
At1g21610.2 68414.m02703 wound-responsive family protein similar...    27   5.3  
At1g21610.1 68414.m02702 wound-responsive family protein similar...    27   5.3  
At3g22010.1 68416.m02777 receptor-like protein kinase-related co...    27   7.0  
At5g66470.1 68418.m08382 expressed protein                             27   9.3  
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa...    27   9.3  
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident...    27   9.3  
At2g17430.1 68415.m02011 seven transmembrane MLO family protein ...    27   9.3  

>At5g42390.1 68418.m05161 metalloendopeptidase identical to
           chloroplast processing enzyme metalloendopeptidase
           [Arabidopsis thaliana] gi|2827039|gb|AAC39482
          Length = 1265

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 188 PTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPC-SQPEKQIKLNLKSERKCDETT 352
           PTK   +D +  ++ N   DEI++ +K G +AP  ++PE ++   L S+ +  E T
Sbjct: 683 PTK-VHVDGVGESDFNISPDEIIESVKSGLLAPIEAEPELEVPKELISQSQLKELT 737


>At1g64820.1 68414.m07349 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family; contains 12
           transmembrane domains, PMID: 11152613
          Length = 502

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -3

Query: 458 GMICFHVSYRWML-YECLFLLI---CSIHGEYFLNVFEFLW 348
           G +CFH+ + W+L Y+  F ++    SI   Y+LNVF  LW
Sbjct: 188 GALCFHIPFCWLLVYKLKFGIVGAALSIGFSYWLNVF-LLW 227


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +2

Query: 170 PTDEKSPTKNFKMDTL--AFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERKCD 343
           P  E     ++ +D +  A TE+ ++ DE  ++ K    +    PEK + +N  S+ K  
Sbjct: 330 PIKETEGDASYPIDVIEKAITEEKHVVDEPANEEKPSESSAALSPEKVVPINQDSDTKPK 389

Query: 344 ETTKTQIHSENTLHGYCILKEKGTHITSNDMKHESRS 454
           E T+    +   +    I +EK  ++     K E+ S
Sbjct: 390 EETEGDAAAPADVIEKAITEEK--YVVDEPSKDETTS 424



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +2

Query: 218 AFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYCI 397
           A TE+ ++ +E   D K         PEK +  N  S+ +  + T+  + S   +    I
Sbjct: 464 AITEEKHVVEEPSKDEKTSESGSALSPEKVVPTNQDSDTEPKKETEGDVPSPADVIEKAI 523

Query: 398 LKEKGTHITSNDMKHESRSFHE 463
             EK  H+    +K E  +  E
Sbjct: 524 TDEK--HVVEEPLKDEQENVSE 543



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/79 (25%), Positives = 31/79 (39%)
 Frame = +2

Query: 218 AFTEDNYLQDEILDDIKQGTIAPCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGYCI 397
           A TE+ Y+ DE   D           PEK +  N   + +  + T+  + S   +    I
Sbjct: 406 AITEEKYVVDEPSKDETTSESGSALCPEKAVPTNQDLDTEPKKETEEDVSSPADIIEKAI 465

Query: 398 LKEKGTHITSNDMKHESRS 454
            +EK  H+     K E  S
Sbjct: 466 TEEK--HVVEEPSKDEKTS 482


>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 438

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 158 ITVIPTDEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAP---CSQPEKQIKLNLKS 328
           + ++PT  ++PTK FK++ + +          L D +  T+ P    +  E + K +  S
Sbjct: 162 VVIVPTGSRNPTKPFKLELVVYAS--------LQDAQPRTVMPLWKANLEEPKAKQSDTS 213

Query: 329 ERKCDETTKTQI 364
               D +TKT++
Sbjct: 214 VMIVDNSTKTRL 225


>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
           T2a [Homo sapiens] GI:2981198; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 541

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 408 FSFNMQYPWRVFSECI*VFVVSSHFLSDLRFNFI 307
           F FN+ +P++   E I  F V+ + L+ + +NF+
Sbjct: 171 FDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFV 204


>At3g23880.1 68416.m03001 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 461 HGMICFHVSYRWMLY 417
           HG++CFHV Y   LY
Sbjct: 117 HGLVCFHVDYDKSLY 131


>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 1   WQCKQRFLGRAHAP 42
           WQC+ RFLG+ H P
Sbjct: 214 WQCEVRFLGKFHHP 227


>At1g51040.1 68414.m05737 phosphatidylinositol 4-kinase, putative
           similar to phosphatidylinositol 4-kinase alpha [Daucus
           carota] GI:3452273; contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 525

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 406 FF*YAVSMESIF*MYLSFCGFITFSFRLKI*FYL 305
           F+ Y++S+ESI   Y SF G+++   +L +  YL
Sbjct: 87  FWPYSLSLESISAFYCSFLGYVSCLSQLMVEGYL 120


>At1g21610.2 68414.m02703 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 683

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 299 EKQIKLNLKSERKCDETTKTQIHS-ENTLHGYCILKEKGTHITSNDMKHESRSFHEDTNF 475
           +K  KL++ + +K   T      + E+ L      ++  T +  +D+KH  R+ H+  N 
Sbjct: 196 DKHTKLSITARKKDQSTAPGSWKTQESPLPSGA--QDANTSVPLDDVKHSDRANHQSRND 253

Query: 476 TDHXTK 493
           T H ++
Sbjct: 254 TSHKSR 259


>At1g21610.1 68414.m02702 wound-responsive family protein similar to
           wound-responsive protein 14.05 (GI:16506638) [Castanea
           sativa]; ESTs gb T42839 and gb|AA395192 come from this
           gene
          Length = 684

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 299 EKQIKLNLKSERKCDETTKTQIHS-ENTLHGYCILKEKGTHITSNDMKHESRSFHEDTNF 475
           +K  KL++ + +K   T      + E+ L      ++  T +  +D+KH  R+ H+  N 
Sbjct: 196 DKHTKLSITARKKDQSTAPGSWKTQESPLPSGA--QDANTSVPLDDVKHSDRANHQSRND 253

Query: 476 TDHXTK 493
           T H ++
Sbjct: 254 TSHKSR 259


>At3g22010.1 68416.m02777 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069; similar to receptor-like protein
           kinase 5 (GI:13506747){Arabidopsis thaliana}
          Length = 263

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 170 PTDEKSPTKNFKMDTLAFTEDNYLQDEILDDIKQGTIAPCSQPEKQI 310
           P       K+F  +T+AF E   L+    D+++ G +A  S  EK +
Sbjct: 155 PNKVMGDAKSFNKETMAFLEQLALEATRKDNMEDGMMALYSAREKMV 201


>At5g66470.1 68418.m08382 expressed protein
          Length = 427

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
 Frame = +2

Query: 74  VCEWKNINDNKLIDSEMSKRRYQQRHNCITVIPTDEKSPTKNFKMDTLAFTEDNYLQDEI 253
           V E  N +  ++       + + Q HN  T     E S +K   +   +F+E    Q ++
Sbjct: 21  VVENPNFSPYRIYSRRRVTKSHLQAHNSTTSYGRTELSSSKKLWIRQRSFSEMEVEQAQL 80

Query: 254 LDDIKQGTIAPCSQPEKQIKLNLKSERK---CDETTKTQI-HSENTLH 385
            DD +Q  I    +    + L++K +R     D+    ++ H+ NT H
Sbjct: 81  EDDEEQVEIDIVDE-ASLLSLSMKPDRNMALLDDYEMEELGHTPNTHH 127


>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 462

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 158 ITVIPTDEKSPTKNFKMDTLAF 223
           + ++PT  ++PTK FK++ + +
Sbjct: 162 VVIVPTGSRNPTKPFKLELVVY 183


>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
           identical to E2F transcription factor-3 E2F3
           [Arabidopsis thaliana] gi|10443853|gb|AAG17610
          Length = 514

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 281 APCSQPEKQIKLNLKSERKCDETTKTQIHSENTLHGY 391
           +PC  P K  ++N+KS+ K +++T     S N +  +
Sbjct: 172 SPCQTPRKGGRVNIKSKAKGNKSTPQTPISTNAVRSF 208


>At2g17430.1 68415.m02011 seven transmembrane MLO family protein /
           MLO-like protein 7 (MLO7) identical to membrane protein
           Mlo7 [Arabidopsis thaliana] gi|14091584|gb|AAK53800;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]
          Length = 542

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 464 LHGMICFHVSYRWMLYECLFLLICSIHGEYFLNVFEFLWFHHIFF 330
           + GM     S R+  ++C  LL+  IH   F N F+   F  I++
Sbjct: 351 VQGMPLVQGSDRYFWFDCPQLLLHLIHFALFQNAFQITHFFWIWY 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,693
Number of Sequences: 28952
Number of extensions: 190354
Number of successful extensions: 544
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -