Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D08
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi...    58   1e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi...    58   2e-09
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A...    32   0.091
At3g25950.1 68416.m03234 hypothetical protein                          28   2.0  
At5g39360.1 68418.m04768 circadian clock coupling factor-related...    26   6.0  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    26   6.0  
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ...    26   6.0  
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi...    26   6.0  

>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
           to 60S ribosomal protein L29 GB:P25886 from (Rattus
           norvegicus)
          Length = 83

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 25/45 (55%), Positives = 31/45 (68%)
 Frame = +1

Query: 46  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESK 180
           +MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T     K  +  +
Sbjct: 22  EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 66



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  KTAKLTEMVSKSQGRPGTNPPLXMDPKFLRNQRFCKKGNLK 205
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 34  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74


>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
           to ribosomal protein L29 GI:7959366 [Panax ginseng]
          Length = 61

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLXHGSKIFKESK 180
           MAKSKNHT HNQ+ KAH+NGIKKPR+ RH  T     K  +  +
Sbjct: 1   MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQR 44



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  KTAKLTEMVSKSQGRPGTNPPLXMDPKFLRNQRFCKKGNLK 205
           ++AK  +   K   R    P   MDPKFLRNQR+ +K N+K
Sbjct: 12  QSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52


>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845
          Length = 400

 Score = 32.3 bits (70), Expect = 0.091
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 61  KNHTNHNQNRKAHRNGIKKPRKTRHESTLXH 153
           KNHT H++ R ++  G K  RKT   +T  H
Sbjct: 88  KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 162 FGSMXKGGFVPGLPWLFDTISVSFAVLVMICMIL 61
           +GS    G VP   WL   + + FA+LV I  +L
Sbjct: 201 YGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234


>At5g39360.1 68418.m04768 circadian clock coupling factor-related
           similar to circadian clock coupling factor ZGT
           [Nicotiana tabacum] GI:14210079
          Length = 249

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 194 PSCKTFDSLKILDPCXRVD 138
           P C+T D L + DPC  +D
Sbjct: 132 PQCRTDDILYVSDPCEHLD 150


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 109 YHFCELCGFGYDLYDSLTLP 50
           YH CE CGF  DLY ++  P
Sbjct: 65  YH-CETCGFDVDLYCAMYPP 83


>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 109 YHFCELCGFGYDLYDSLTLPF**VFNP 29
           ++ C +CGF  DL  +LTLP   + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208


>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 426

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 109 YHFCELCGFGYDLY 68
           +H  E+CG G+DLY
Sbjct: 33  FHHMEVCGIGHDLY 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,141,091
Number of Sequences: 28952
Number of extensions: 105142
Number of successful extensions: 338
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)