Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a04f
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 43 2e-04
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 42 5e-04
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 40 0.001
At1g50980.1 68414.m05731 F-box family protein contains F-box dom... 40 0.002
At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1... 38 0.008
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr... 38 0.008
At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00... 37 0.010
At1g16940.1 68414.m02055 F-box family protein contains F-box dom... 37 0.010
At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5) iden... 37 0.014
At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5) iden... 37 0.014
At1g21760.1 68414.m02724 F-box family protein Contains PF|00646 ... 37 0.014
At3g03360.1 68416.m00334 F-box family protein low similarity to ... 36 0.018
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 36 0.024
At3g58950.1 68416.m06569 F-box family protein contains F-box dom... 35 0.042
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 35 0.042
At3g17270.1 68416.m02208 F-box family protein 35 0.056
At1g80960.3 68414.m09501 F-box protein-related contains weak hit... 35 0.056
At1g80960.2 68414.m09500 F-box protein-related contains weak hit... 35 0.056
At1g80960.1 68414.m09499 F-box protein-related contains weak hit... 35 0.056
At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00... 35 0.056
At1g16930.1 68414.m02053 F-box family protein contains F-box dom... 35 0.056
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 34 0.073
At5g26960.1 68418.m03217 kelch repeat-containing F-box family pr... 34 0.073
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 34 0.073
At3g59160.1 68416.m06596 F-box family protein contains F-box dom... 34 0.073
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 34 0.097
At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 34 0.097
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 34 0.097
At3g48880.2 68416.m05340 F-box family protein N7 protein - Medic... 34 0.097
At3g48880.1 68416.m05339 F-box family protein N7 protein - Medic... 34 0.097
At3g47030.1 68416.m05107 F-box family protein contains F-box dom... 34 0.097
At4g05490.1 68417.m00830 F-box family protein (FBL22) contains s... 33 0.13
At3g58820.1 68416.m06556 F-box family protein contains F-box dom... 33 0.13
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00... 33 0.13
At5g57360.1 68418.m07166 F-box family protein / LOV kelch protei... 33 0.17
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 33 0.17
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 33 0.22
At3g59170.1 68416.m06597 F-box family protein contains F-box dom... 33 0.22
At3g59000.1 68416.m06576 F-box family protein contains F-box dom... 33 0.22
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 32 0.30
At5g48170.1 68418.m05950 F-box family protein contains Pfam PF00... 32 0.30
At5g38396.1 68418.m04641 F-box family protein contains F-box dom... 32 0.30
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 32 0.39
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 31 0.52
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 31 0.52
At5g39250.1 68418.m04754 F-box family protein ; similar to SKP... 31 0.52
At3g42722.1 68416.m04458 F-box family protein contains F-box dom... 31 0.52
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 31 0.52
At1g23770.1 68414.m02999 F-box family protein contains Pfam PF00... 31 0.52
At5g56370.2 68418.m07037 F-box family protein contains F-box dom... 31 0.68
At5g56370.1 68418.m07036 F-box family protein contains F-box dom... 31 0.68
At5g22730.1 68418.m02655 F-box family protein contains F-box dom... 31 0.68
At5g08090.1 68418.m00943 hypothetical protein 31 0.68
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 31 0.68
At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting... 31 0.68
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 31 0.90
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr... 31 0.90
At1g69630.1 68414.m08010 F-box family protein contains F-box dom... 31 0.90
At5g38390.1 68418.m04639 F-box family protein contains F-box dom... 30 1.2
At5g28180.1 68418.m03411 kelch repeat-containing F-box family pr... 30 1.2
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 30 1.2
At4g05497.1 68417.m00833 F-box family protein contains Pfam PF00... 30 1.2
At3g58860.1 68416.m06560 F-box family protein contains F-box dom... 30 1.2
At3g03030.1 68416.m00298 F-box family protein contains F-box dom... 30 1.2
At1g58310.1 68414.m06633 F-box family protein contains F-box dom... 30 1.2
At4g05470.1 68417.m00829 F-box family protein (FBL21) contains s... 30 1.6
At3g62440.1 68416.m07014 F-box family protein contains F-box dom... 30 1.6
At1g23780.1 68414.m03000 F-box family protein contains Pfam PF00... 30 1.6
At1g22000.1 68414.m02752 F-box family protein contains F-box dom... 30 1.6
At5g56420.2 68418.m07043 F-box family protein contains F-box dom... 29 2.1
At5g56420.1 68418.m07042 F-box family protein contains F-box dom... 29 2.1
At5g25860.1 68418.m03068 F-box family protein contains F-box dom... 29 2.1
At3g59200.1 68416.m06600 F-box family protein contains F-box dom... 29 2.1
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 29 2.1
At3g58980.1 68416.m06574 F-box family protein contains two F-box... 29 2.1
At3g03040.1 68416.m00299 F-box family protein contains F-box dom... 29 2.1
At1g72390.1 68414.m08373 expressed protein 29 2.1
At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00... 29 2.1
At5g40050.1 68418.m04858 F-box family protein contains F-box dom... 29 2.8
At4g33160.1 68417.m04724 F-box family protein (FBX13) contains s... 29 2.8
At3g58900.1 68416.m06564 F-box family protein contains F-box dom... 29 2.8
At3g58880.1 68416.m06562 F-box family protein contains F-box dom... 29 2.8
At3g42770.1 68416.m04468 F-box family protein contains F-box dom... 29 2.8
At1g78750.1 68414.m09178 F-box family protein contains F-box dom... 29 2.8
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom... 29 2.8
At1g55660.1 68414.m06371 F-box family protein contains F-box dom... 29 2.8
At1g10780.1 68414.m01235 F-box family protein ; similar to SKP1... 29 2.8
At5g03100.1 68418.m00258 F-box family protein contains F-box dom... 29 3.6
At4g13985.1 68417.m02163 F-box family protein contains F-box dom... 29 3.6
At4g05460.1 68417.m00828 F-box family protein (FBL20) contains s... 29 3.6
At4g00315.1 68417.m00040 F-box family protein contains F-box dom... 29 3.6
At3g56780.1 68416.m06315 F-box family protein contains F-box dom... 29 3.6
At3g21120.1 68416.m02669 F-box family protein similar to GP:2019... 29 3.6
At1g33010.1 68414.m04065 F-box family protein 29 3.6
At5g44950.1 68418.m05513 F-box family protein contains F-box dom... 28 4.8
At4g09790.1 68417.m01608 F-box family protein hypothetical prote... 28 4.8
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 28 4.8
At3g49520.1 68416.m05412 F-box family protein contains weak hit ... 28 4.8
At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 28 4.8
At2g39415.1 68415.m04838 F-box family protein contains Pfam prof... 28 4.8
At5g56440.1 68418.m07045 F-box family protein contains F-box dom... 28 6.4
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 28 6.4
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 28 6.4
At5g02700.1 68418.m00208 F-box family protein low similarity to ... 28 6.4
At3g28410.1 68416.m03549 F-box family protein low similarity to ... 28 6.4
At3g17540.1 68416.m02240 F-box family protein similar to hypothe... 28 6.4
At3g16210.1 68416.m02046 F-box family protein contains F-box dom... 28 6.4
At2g41170.1 68415.m05085 F-box family protein contains Pfam PF00... 28 6.4
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00... 28 6.4
At1g51550.1 68414.m05802 F-box family protein similar to F-box Z... 28 6.4
At1g15680.1 68414.m01882 F-box family protein contains Pfam:PF00... 28 6.4
At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con... 28 6.4
At5g41840.1 68418.m05095 F-box family protein contains F-box dom... 27 8.4
At5g23850.1 68418.m02800 expressed protein 27 8.4
At5g22720.1 68418.m02654 F-box family protein contains F-box dom... 27 8.4
At4g26350.1 68417.m03788 F-box family protein contains F-box dom... 27 8.4
At3g59230.1 68416.m06603 F-box family protein contains F-box dom... 27 8.4
At3g59210.1 68416.m06601 F-box family protein contains F-box dom... 27 8.4
At3g59150.1 68416.m06594 F-box family protein contains F-box dom... 27 8.4
At3g54910.1 68416.m06085 expressed protein various pedicted prot... 27 8.4
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 27 8.4
At3g44080.1 68416.m04722 F-box family protein contains F-box dom... 27 8.4
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00... 27 8.4
At2g26850.1 68415.m03221 F-box family protein contains Pfam PF00... 27 8.4
At1g32020.1 68414.m03939 F-box family protein similar to heat sh... 27 8.4
At1g31350.1 68414.m03836 F-box family protein similar to hypothe... 27 8.4
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
L D +L +FS+L H ++CR A VCR+WR+ + W
Sbjct: 193 LTDDLLHMVFSFLNHVDLCRSAMVCRQWRVASAHEDFW 230
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 457 PSLRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTAMQLHD 585
P+L ++L + T + +L A C +LTH L + + +HD
Sbjct: 792 PALEELDLSYGTLCQTAIDDLLACCTHLTH--LSLNGCVNMHD 832
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRP 390
LP +L +F+ L +R+ +A+ C+ WR + + LWT + LRP
Sbjct: 50 LPYDTVLQLFTCLNYRDRASLASTCKTWRCLGASSCLWTSLDLRP 94
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M + LP+ VL NIFS+LT +E + +C+RWR
Sbjct: 1 MDHVSSLPEGVLCNIFSFLTTKEAALTSILCKRWR 35
>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
Pfam:PF00646
Length = 370
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 199 TRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
T +++ +++ TI + PDKVLL I S L +++ + +RWR + D K
Sbjct: 18 TNNKIYQENMEKKIRTISEFPDKVLLKILSLLPSKDVVATGVLSKRWRSLWKDVK 72
>At5g52880.1 68418.m06563 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 269
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 166 ILNVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRM 345
I+ A +A+ R S R + I LP +L++IFS+L + A V R W
Sbjct: 88 IVEFKQAKVALKR---RSKNREEEDIDIPSLPQDILIHIFSFLEISSLVSSAQVSRSWNQ 144
Query: 346 VAYDTKLW 369
++ LW
Sbjct: 145 ATHENSLW 152
>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
protein / F-box family protein contains Pfam profiles
PF00514: Armadillo/beta-catenin-like repeat, PF00646:
F-box domain; similar to F-box protein FBL2 (GI:6010699)
[Rattus norvegicus]
Length = 928
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 232 RQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
+Q LP + ++F+ L +R+ +A+ CR WR + + LW+ + LR
Sbjct: 35 QQYVNWTSLPYDTVFHLFTRLNYRDRASLASTCRTWRSLGASSFLWSSLDLR 86
>At3g29830.1 68416.m03796 F-box family protein contains Pfam:PF00646
F-box domain
Length = 464
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
Q I LPD VL+ I S+L+ ++ + + + +RWR + Y+ K
Sbjct: 6 QRDRISSLPDVVLVMILSFLSFKDNVKTSILSKRWRNICYEAK 48
>At1g16940.1 68414.m02055 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
I +LPD +L IF L E+ + + +CRRWR V
Sbjct: 13 INQLPDSLLCEIFFNLPTEEVVKTSLICRRWRYV 46
>At3g54480.2 68416.m06028 SKP1 interacting partner 5 (SKIP5)
identical to GP:14348816 SKP1-interacting partner 5
{Arabidopsis thaliana}
Length = 118
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 196 ITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTH-REICRMATVCRRWRMVAYDTKLWT 372
I ++ + +T++ L D L++I S+L+ + A VC RWR +A +LW
Sbjct: 18 IVESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWL 77
Query: 373 HV 378
V
Sbjct: 78 RV 79
>At3g54480.1 68416.m06027 SKP1 interacting partner 5 (SKIP5)
identical to GP:14348816 SKP1-interacting partner 5
{Arabidopsis thaliana}
Length = 274
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 196 ITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTH-REICRMATVCRRWRMVAYDTKLWT 372
I ++ + +T++ L D L++I S+L+ + A VC RWR +A +LW
Sbjct: 18 IVESKMKKRMKPYSLTSLNNLDDGCLMHILSFLSPIPDRYNTALVCHRWRYLACHPRLWL 77
Query: 373 HV 378
V
Sbjct: 78 RV 79
>At1g21760.1 68414.m02724 F-box family protein Contains PF|00646
F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and
gb|T88189 come from this gene similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 328
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
LPD++L +F+ + ++ R + VCR+WR + W + L+
Sbjct: 62 LPDELLFEVFARMMPYDLGRASCVCRKWRYTVRNPMFWRNACLK 105
>At3g03360.1 68416.m00334 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 481
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 214 SSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
S S+ + I +LPD +L I SYL R + + + RRWR V DT
Sbjct: 28 SPSYLKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDT 76
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
+E LP+ ++ +IFS L I R+ VCR WR V
Sbjct: 25 LESLPEDIIADIFSRLPISSIARLMFVCRSWRSV 58
>At3g58950.1 68416.m06569 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M LPD+VL +I S+LT +E + V +RWR
Sbjct: 1 MDLFSSLPDEVLCHILSFLTTKEAALASVVSKRWR 35
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 35.1 bits (77), Expect = 0.042
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 199 TRDELSS-SFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKL 366
T DE S+ RR+ T+IE L +L IFS+L ++ VC W V KL
Sbjct: 6 TGDESSARKMRRKVPTSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKRLKL 62
>At3g17270.1 68416.m02208 F-box family protein
Length = 134
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
MTTI LPD++ I S + + + + T+C+RW + D +
Sbjct: 1 MTTIPNLPDELESEILSRVPAKSLAKWKTICKRWYALFRDPR 42
>At1g80960.3 68414.m09501 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 462
Score = 34.7 bits (76), Expect = 0.056
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 220 SFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
S + + + I KLPD VLL I S L+ E R + V +RW V
Sbjct: 43 SVKVKNVDWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHV 85
>At1g80960.2 68414.m09500 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 34.7 bits (76), Expect = 0.056
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 220 SFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
S + + + I KLPD VLL I S L+ E R + V +RW V
Sbjct: 43 SVKVKNVDWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHV 85
>At1g80960.1 68414.m09499 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain
Length = 486
Score = 34.7 bits (76), Expect = 0.056
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +1
Query: 220 SFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
S + + + I KLPD VLL I S L+ E R + V +RW V
Sbjct: 43 SVKVKNVDWISKLPDDVLLIILSRLSTEEAIRTSVVSKRWEHV 85
>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
F-box domain
Length = 479
Score = 34.7 bits (76), Expect = 0.056
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
Q + LPD +L+ I S L+ +E R + + +RWR + +T+
Sbjct: 11 QQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETR 53
>At1g16930.1 68414.m02053 F-box family protein contains F-box domain
Pfam:PF00646
Length = 449
Score = 34.7 bits (76), Expect = 0.056
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 205 DELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
DE S ++R I LPD +L I S L+ +E + + +RWR LW HV
Sbjct: 3 DETSVKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWR------NLWLHV 54
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAY 354
M + LPD++L +I S+LT +E ++ + +RWR ++A+
Sbjct: 1 MDHLSNLPDELLCHIMSFLTTKEAALISVLSKRWRNLIAF 40
>At5g26960.1 68418.m03217 kelch repeat-containing F-box family
protein predicted proteins, Arabidopsis thaliana and
Oryza sativa; contains Pfam profiles PF01344: Kelch
motif, PF00646: F-box domain
Length = 413
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 217 SSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
SS TI LPD +LL S + I +A VCRRW
Sbjct: 34 SSTAANSSATIASLPDDLLLECISRVPSSSIPSLAVVCRRW 74
>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M + LPD+VL +I S+LT +E + + +RWR
Sbjct: 1 MDHVSSLPDEVLYHILSFLTTKEAALTSILSKRWR 35
>At3g59160.1 68416.m06596 F-box family protein contains F-box domain
Pfam:PF00646
Length = 464
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I LPD +L ++ SYLT +E + + RRWR
Sbjct: 15 INDLPDALLCHVLSYLTTKEAASTSLLSRRWR 46
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 33.9 bits (74), Expect = 0.097
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
Q + LPD +L+ I S+L +E R + + +RWR + +T
Sbjct: 5 QQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLET 46
>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 33.9 bits (74), Expect = 0.097
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
I KLP+ +L I SYL ++I R + + +RW+ V
Sbjct: 20 ISKLPEVLLSQILSYLPTKDIVRTSVLSKRWKSV 53
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 469
Score = 33.9 bits (74), Expect = 0.097
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
+I LPD VL +IFSY+ R + + +RWR V +T
Sbjct: 29 SISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSET 67
>At3g48880.2 68416.m05340 F-box family protein N7 protein - Medicago
truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 309
Score = 33.9 bits (74), Expect = 0.097
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 211 LSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICR-MATVCRRWRMVAYDTKLWTHVSL 384
+ + R++ E+L +L+ IF + E+ +A VCR WR D LW V L
Sbjct: 1 MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDL 59
>At3g48880.1 68416.m05339 F-box family protein N7 protein - Medicago
truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 309
Score = 33.9 bits (74), Expect = 0.097
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 211 LSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICR-MATVCRRWRMVAYDTKLWTHVSL 384
+ + R++ E+L +L+ IF + E+ +A VCR WR D LW V L
Sbjct: 1 MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDL 59
>At3g47030.1 68416.m05107 F-box family protein contains F-box domain
Pfam:PF00646
Length = 414
Score = 33.9 bits (74), Expect = 0.097
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = +1
Query: 163 GILNVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
G+L + + ++++ R+ + E++PD +L+++FS L+ ++ R + R W
Sbjct: 3 GMLGLSAVMGKRPKQQVTARPRKCPIEKPEEIPDDLLIDVFSRLSIEDVARCRCLSRFWS 62
Query: 343 MV---AYDTKLWTHV-SLRPEISGLHVXXXXXXXXXXXXRFGPSLRYIELPIELITHT 504
+ Y T+L+ + S RP I + PS Y LP I+++
Sbjct: 63 SILRRRYFTELFHKMSSTRPRILFTFLYYGKRLFYSMPQDLDPSNHYSPLPYFSISYS 120
>At4g05490.1 68417.m00830 F-box family protein (FBL22) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 307
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMAT-VCRRWRMVAYDTKLWTHVSLR 387
+LP +L +I L+ EI A VCR WR V+ D +W + +R
Sbjct: 29 ELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMR 74
>At3g58820.1 68416.m06556 F-box family protein contains F-box domain
Pfam:PF00646
Length = 413
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAYDTKLWTH--VSLRPE 393
M + LP+++L +I S+LT +E + + +RWR ++A+ L+ V L PE
Sbjct: 1 MDGVSSLPNELLCHILSFLTTKEAALTSILSKRWRNLIAFVPNLYIDDTVFLHPE 55
>At3g17280.1 68416.m02209 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 386
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
MTTI LP +L I S L + I ++ T C++W + D K
Sbjct: 1 MTTISDLPYDLLPEILSRLPTKSIPKLKTTCKKWYALFKDPK 42
>At5g57360.1 68418.m07166 F-box family protein / LOV kelch protein 1
(LKP1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to clock-associated PAS protein ZTL; ZEITLUPE
GI:7839456, LOV kelch protein 1 GI:11610573, Adagio 1
GI:13487068 from [Arabidopsis thaliana]; contains Pfam
profile PF01344: Kelch motif; identical to cDNA Adagio 1
(ADO1) GI:13487067; identical to cDNA LKP1 mRNA for LOV
kelch protein 1, GI:11610572
Length = 609
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 232 RQMTTIEKLPDKVL-LNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
R M + +L D+V+ + I S LT R++ +++VCRR ++ + LW V
Sbjct: 192 RGMCGLFQLSDEVVSMKILSRLTPRDVASVSSVCRRLYVLTKNEDLWRRV 241
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
I LPD+ L IF LT ++ R + VCRRW
Sbjct: 74 ISNLPDECLSLIFQSLTCADLKRCSLVCRRW 104
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
LPD +L I S+L I R TVC+RW +
Sbjct: 43 LPDDLLERILSFLPIASIFRAGTVCKRWNEI 73
>At3g59170.1 68416.m06597 F-box family protein contains F-box domain
Pfam:PF00646
Length = 473
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I LPD +L +I S+LT +E + + RRWR
Sbjct: 9 INVLPDALLCHILSFLTTKEAASTSLLSRRWR 40
>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAY 354
M + LPD++L +I S+LT +E + + +RWR ++A+
Sbjct: 1 MDRVGSLPDELLSHILSFLTTKEAALTSLLSKRWRYLIAF 40
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEIS 399
LPD+ L ++F +L + R + VC+RW +V ++ + + EIS
Sbjct: 46 LPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEIS 93
>At5g48170.1 68418.m05950 F-box family protein contains Pfam
PF00646: F-box domain; similar to unknown protein
(pir||T09884);
Length = 157
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 268 VLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
VL+ I L +C A VCR W VA + +W + R
Sbjct: 34 VLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFR 73
>At5g38396.1 68418.m04641 F-box family protein contains F-box domain
Pfam:PF00646
Length = 462
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAYDTKL 366
M + +PD+++ +I S+LT +E + + +RWR ++A+ + L
Sbjct: 1 MDLLRNIPDELICHILSFLTTKEAALTSVLSKRWRNLLAFVSNL 44
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
LPD+ L +F +L R A VCRRW +V
Sbjct: 43 LPDECLALVFQFLNSGNRKRCALVCRRWMIV 73
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 250 EKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
++LP +L+ I + ++ ++ C+ W+ VA +LW
Sbjct: 44 DQLPMDILVQILMMMEPKDAVKLGLTCKAWKCVASGNRLW 83
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 31.5 bits (68), Expect = 0.52
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +1
Query: 250 EKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
++LP +L+ I + ++ ++ C+ W+ VA +LW
Sbjct: 44 DQLPMDILVQILMMMEPKDAVKLGLTCKAWKCVASGNRLW 83
>At5g39250.1 68418.m04754 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 252
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 262 DKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
++VL N+F L ++ VC++WR +A D W
Sbjct: 4 EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYW 39
>At3g42722.1 68416.m04458 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 129
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M +I+ LPD++L+ I S++ E + + +RWR
Sbjct: 4 MASIDCLPDELLVGILSFILTNEAASTSILSKRWR 38
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
M I LPD++L +I S+L+ +E +++ RW+ V
Sbjct: 1 MDRISSLPDEILEHILSFLSTKEAALTSSLSTRWKNV 37
>At1g23770.1 68414.m02999 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box only protein 7
(SP:Q9Y3I1) {Homo sapiens} ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 350
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
LP ++ L I L I MA VC R +A D LW H L
Sbjct: 212 LPTELKLKILELLPGVSIGYMACVCTEMRYLASDNDLWEHKCL 254
>At5g56370.2 68418.m07037 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M +I LPD LL I S L +++ + + +RWR
Sbjct: 1 MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWR 35
>At5g56370.1 68418.m07036 F-box family protein contains F-box domain
Pfam:PF00646
Length = 421
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M +I LPD LL I S L +++ + + +RWR
Sbjct: 1 MDSISLLPDDFLLRILSLLPTKDVLNTSVLSKRWR 35
>At5g22730.1 68418.m02655 F-box family protein contains F-box domain
Pfam:PF00646
Length = 466
Score = 31.1 bits (67), Expect = 0.68
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I KLPD ++ I YL ++I R +++ RW+
Sbjct: 30 ISKLPDSLITQILLYLPIKDIVRTSSLSSRWK 61
>At5g08090.1 68418.m00943 hypothetical protein
Length = 322
Score = 31.1 bits (67), Expect = 0.68
Identities = 14/57 (24%), Positives = 33/57 (57%)
Frame = -3
Query: 371 VHNFVSYATILHRLQTVAIRHISRCVRYEKMFNKTLSGSFSMVVICLLRKLDDNSSL 201
V +SYA++ H L + HI+ RY +++ ++ S + ++ ++ +++DN S+
Sbjct: 68 VTGVISYASMSHPLTALTFSHIA--TRYVYLYSIYITSSVAYILFLIVAEVEDNVSV 122
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 31.1 bits (67), Expect = 0.68
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
LPD++ + +FS L + + + + C +R + D ++H+ L+
Sbjct: 430 LPDELTIKVFSGLDTKSLMQASACCTMFRKCSIDPLCYSHIDLK 473
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLRPEISGLHVXXXXXXXX 435
LP ++ + +FS L + + + A C + A D ++H+ L
Sbjct: 98 LPPELTIKVFSMLDTKSMMQAAVCCTMFNKCAMDRLCYSHIDLTTSARYADKGVVSTMIN 157
Query: 436 XXXXRFGPSLRYIEL-PIELITHTVLHELAAKCPNLTHM 549
LR + L + I + L + + CPN+T +
Sbjct: 158 RAGKELRSRLRSLRLYNLRPIKYRSLCDALSVCPNITDL 196
>At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting
partner 3-related low similarity to SKP1 interacting
partner 3 [Arabidopsis thaliana] GI:10716951; contains
Pfam profile PF00646: F-box domain
Length = 300
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+P+ + +F YLT EIC +A + R +R A +W
Sbjct: 24 IPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVW 61
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(gb|AAF30317.1)
Length = 359
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 259 PDKVLLNIFSYLTHREICRMATVCRRWRMV---AYDTKLWTHVSLRPEI 396
PD+V+L I + L + + R +VC+ W + Y T L+ +S++ ++
Sbjct: 10 PDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQL 58
>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 402
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +1
Query: 232 RQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
R+ T+I+ LP+ +LLN F+ ++ ++ V +R+R + +++ SL
Sbjct: 33 REPTSIDSLPNDLLLNCFARVSRMYYPALSRVSKRFRSIVTSPEIYNTRSL 83
>At1g69630.1 68414.m08010 F-box family protein contains F-box domain
Pfam:PF00646
Length = 451
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
I KLPD +L + L +++ + + + RRWR LW HV
Sbjct: 20 ISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWR------NLWKHV 57
>At5g38390.1 68418.m04639 F-box family protein contains F-box domain
Pfam:PF00646
Length = 456
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAY 354
M + LP ++L +I S+LT +E + + +RWR ++A+
Sbjct: 1 MDLLSNLPYELLCHILSFLTTKEAALTSVLSKRWRNLIAF 40
>At5g28180.1 68418.m03411 kelch repeat-containing F-box family
protein contains Pfam PF01344: Kelch motif; contains
Pfam PF00646: F-box domain
Length = 352
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 226 RRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW-THVSLRPEISG 402
R+ + T LPD+++LN + ++ +++ VC+ +R + +L V L+ S
Sbjct: 30 RKEKKLTFLSLPDEIVLNCLARISRSYYPKLSLVCKTFRTLLISNELTVARVQLKTYESF 89
Query: 403 LHV 411
HV
Sbjct: 90 FHV 92
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
M I LPD++L +I S + + R + + +RWR V +T
Sbjct: 10 MDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSET 50
>At4g05497.1 68417.m00833 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 1 (GI:10716947) [Arabidopsis thaliana]; similar
to F-box protein FBX13 (GI:6456110) [Mus musculus]
Length = 246
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMAT-VCRRWRMVAYDTKLWTHVSLR 387
+LP ++ +I L EI + A VC+ WR V D +W + +R
Sbjct: 23 ELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIR 68
>At3g58860.1 68416.m06560 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
+M KLPD+V+ +I S L +E + + ++WR
Sbjct: 5 KMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWR 40
>At3g03030.1 68416.m00298 F-box family protein contains F-box domain
Pfam:PF00646
Length = 474
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M + LPD V +I S+LT +E + + ++WR
Sbjct: 1 MDLVSSLPDDVRCHILSFLTTKESALTSVLSKKWR 35
>At1g58310.1 68414.m06633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 505
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 232 RQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
R I LPD +L +I S+L +E + + ++WR
Sbjct: 5 RSRDIISGLPDSLLCHILSFLNTKEAASTSVLAKKWR 41
>At4g05470.1 68417.m00829 F-box family protein (FBL21) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 576
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMAT-VCRRWRMVAYDTKLWTHVSLR 387
LP ++ +I L+ +I A +CR WR + D +W ++LR
Sbjct: 43 LPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLR 87
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 172 NVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMAT-VCRRWRMV 348
++ + + T S ++ LP ++ +I L+ +I A VC+ WR +
Sbjct: 293 SISVSMVKTTTSTTLESLLMKERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRI 352
Query: 349 AYDTKLWTHVSLR 387
D +W ++ R
Sbjct: 353 CKDPSMWRKINTR 365
>At3g62440.1 68416.m07014 F-box family protein contains F-box domain
Pfam:PF00646
Length = 457
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
M I LPD+++ +I S+L+ RE + +RW
Sbjct: 1 MDRISNLPDEIICHIGSFLSAREAAFTTVLSKRW 34
>At1g23780.1 68414.m03000 F-box family protein contains Pfam
PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only
protein 7 {Homo sapiens}; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 475
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+LP ++ L I L I MA VC R +A D LW
Sbjct: 324 RLPTELKLKILELLPGVSIGNMACVCTEMRYLASDNDLW 362
>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
Pfam:PF00646
Length = 727
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 160 WGILNVDTATIAITRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
W I+ +D + E ++R T I LPD +LL I ++ +E + + ++W
Sbjct: 5 WDIMPIDKHLSTVPETE---GCQQRIETRICALPDDLLLQILPHVPTKEAVATSILSKQW 61
Query: 340 RMV 348
R V
Sbjct: 62 RYV 64
>At5g56420.2 68418.m07043 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
+ +LPD LL I S+L +++ + + +RWR +
Sbjct: 8 LSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFL 41
>At5g56420.1 68418.m07042 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
+ +LPD LL I S+L +++ + + +RWR +
Sbjct: 8 LSQLPDDFLLQILSWLPTKDVLVTSLLSKRWRFL 41
>At5g25860.1 68418.m03068 F-box family protein contains F-box domain
Pfam:PF00646
Length = 448
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWR 342
LPD++L I SYL + + + +RWR
Sbjct: 17 LPDEILAKILSYLPTKRAVSTSLISKRWR 45
>At3g59200.1 68416.m06600 F-box family protein contains F-box domain
Pfam:PF00646
Length = 520
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAYDTKL 366
I LP+ V+ +I S+L +E + + ++WR + AY T L
Sbjct: 9 ISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNL 49
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
I LPD +L ++ S+L E + + +RWR +
Sbjct: 14 ISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFL 47
>At3g58980.1 68416.m06574 F-box family protein contains two F-box
domains Pfam:PF00646
Length = 594
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M I LP++++ +I S+L+ +E + + +RWR
Sbjct: 1 MDRISNLPNEIICHIVSFLSAKEAAFASILSKRWR 35
>At3g03040.1 68416.m00299 F-box family protein contains F-box domain
Pfam:PF00646
Length = 472
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M + LPD+V I S+LT +E + + ++WR
Sbjct: 1 MDLLSSLPDEVRCLILSFLTTKESASTSVLSKKWR 35
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 170 RMPHESMIESNQAKSHYHTNDTQYTRTAPSKTAVHCRTTLD*SPQIS 30
RMPH + I SN ++ ++ N Q P K R SP++S
Sbjct: 264 RMPHNAFIRSNFPQTSWNVNPGQQIEKEPKKEEQFSRRISAQSPRLS 310
>At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00646
F-box domain; contains TIGRFAM TIGR01640 : F-box protein
interaction domain
Length = 362
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVA-YD 357
M T+ LPD ++ IFS + + + + C++W ++ YD
Sbjct: 1 MATVTDLPDDLVREIFSRVPLTSLRAVRSTCKKWNAISKYD 41
>At5g40050.1 68418.m04858 F-box family protein contains F-box domain
Pfam:PF00646
Length = 415
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 199 TRDELSSSFRRRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
T+ LSSS + +I LPD++L +I S+L + + + +RWR
Sbjct: 3 TKRVLSSS---GSIDSISPLPDELLSHILSFLPTKRAASTSILSKRWR 47
>At4g33160.1 68417.m04724 F-box family protein (FBX13) contains
similarity to fimbriata GI:547307 from [Antirrhinum
majus]
Length = 417
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
++ L D VL + S+L RM++VC+RW+
Sbjct: 27 MDDLNDDVLERVLSWLPTSCFFRMSSVCKRWK 58
>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
Pfam:PF00646
Length = 327
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M LP+++L +I S+L+ +E + + +RWR
Sbjct: 1 MDLFSSLPNELLYHILSFLSTKEAALTSVLSKRWR 35
>At3g58880.1 68416.m06562 F-box family protein contains F-box domain
Pfam:PF00646
Length = 454
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAY 354
+ LPD +L +I S LT +E + + +RWR ++A+
Sbjct: 5 VSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAF 41
>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
Pfam:PF00646
Length = 532
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWR 342
LPD++L+ I S+L +E + + +RWR
Sbjct: 4 LPDELLVQILSFLPTKEATSTSLLSKRWR 32
>At1g78750.1 68414.m09178 F-box family protein contains F-box domain
Pfam:PF00646
Length = 458
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = +1
Query: 232 RQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
R++ I LP+ +L + YL +++ + + + RWR
Sbjct: 15 REVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWR 51
>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 916
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSLR 387
++ LPD+ + + YL R+I +A V ++ + LW + LR
Sbjct: 16 SLSVLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEEPLWMSLCLR 63
>At1g55660.1 68414.m06371 F-box family protein contains F-box domain
Pfam:PF00646
Length = 492
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M I +LPD++L+ + S+L+ ++ + + RW+
Sbjct: 52 MDKISQLPDELLVKVLSFLSTKDAVSTSILSMRWK 86
>At1g10780.1 68414.m01235 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 418
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTH-REICRMATVCRRWR 342
++ LPD +L I SYLT R++ V +RW+
Sbjct: 1 MDSLPDAILQYILSYLTSARDVAACNCVSKRWK 33
>At5g03100.1 68418.m00258 F-box family protein contains F-box domain
Pfam:PF00646
Length = 307
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
I LPD++L +I + + R + + +RW+ V Y+T
Sbjct: 11 ISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYET 48
>At4g13985.1 68417.m02163 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
+ LPD +L I L +++ +++ + RRWR V
Sbjct: 21 LRNLPDCLLFKILLNLPTKDVVKLSVLSRRWRNV 54
>At4g05460.1 68417.m00828 F-box family protein (FBL20) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 302
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 235 QMTTIEKLPDKVLLNIFSYLTHREICRMAT-VCRRWRMVAYDTKLWTHVSL 384
+ T +LP ++ I L EI A VCR WR V D +W + +
Sbjct: 15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDM 65
>At4g00315.1 68417.m00040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 441
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M +LPD++L+ + S+L ++ R + + RW+
Sbjct: 1 MDKTSQLPDELLVKVLSFLPTKDAVRTSLLSMRWK 35
>At3g56780.1 68416.m06315 F-box family protein contains F-box domain
Pfam:PF00646
Length = 431
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/52 (23%), Positives = 29/52 (55%)
Frame = +1
Query: 229 RRQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHVSL 384
++ + I +LPD ++L I S+++ + + + + ++W+ LWT V +
Sbjct: 3 KKVCSCINELPDDLILKILSFVSTKHVVVTSLLSKKWK------SLWTRVPI 48
>At3g21120.1 68416.m02669 F-box family protein similar to
GP:20197985 F-box protein family, AtFBX9 (GP:20197985)
{Arabidopsis thaliana}; contains weak hit to Pfam
PF00646: F-box domain
Length = 367
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYD 357
LP+ ++L I S + + R + CRRW + D
Sbjct: 3 LPEDLVLEILSKVPAVSLARFRSTCRRWNALVVD 36
>At1g33010.1 68414.m04065 F-box family protein
Length = 361
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
T++ +P ++L IFS L+ + + R+ + + WR
Sbjct: 6 TLDSIPTDLILEIFSRLSAKSVGRLRCLSKLWR 38
>At5g44950.1 68418.m05513 F-box family protein contains F-box domain
Pfam:PF00646
Length = 438
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
I +LPD +L +I YL E R + + RWR KLW V
Sbjct: 6 ISELPDGLLNHILMYLHIEESIRTSVLSSRWR------KLWLKV 43
>At4g09790.1 68417.m01608 F-box family protein hypothetical protein
-Arabidopsis thaliana;PID:g2245079; contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 351
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYD 357
MTTI LP ++ I S + + R+ C+RW ++ D
Sbjct: 1 MTTICDLPRDLVARILSRVPLTSMRRVRFTCKRWNTISKD 40
>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
Pfam:PF00646
Length = 470
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
M I LP++++ +I S+L+ +E + + +RW+
Sbjct: 1 MDRISNLPNEIICHIVSFLSAKEAAFASVLSKRWQ 35
>At3g49520.1 68416.m05412 F-box family protein contains weak hit to
Pfam:PF00646 F-box domain and weak hit to TIGRFAM
TIGR01640 : F-box protein interaction domain
Length = 388
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVA 351
MTTI LP ++ IFS++ + + + C+ W ++
Sbjct: 1 MTTISDLPYDLVKEIFSWVPFTSLRAVRSTCKTWNALS 38
>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
Pfam:PF00646
Length = 737
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I +LPD+VL I S ++ +E + + +RW+
Sbjct: 7 ISRLPDEVLGRILSLISTKEAVSTSVLSKRWK 38
>At2g39415.1 68415.m04838 F-box family protein contains Pfam profile
PF00646: F-box domain
Length = 119
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
+I LPD +L I S L R + + RWR V DT
Sbjct: 39 SISSLPDVILQQILSSLPTNLAIRTSVLSTRWRHVWSDT 77
>At5g56440.1 68418.m07045 F-box family protein contains F-box domain
Pfam:PF00646
Length = 430
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLWTHV 378
M I LPD V+ I S++ + + + +RWR LW HV
Sbjct: 1 MDRISLLPDDVVFKILSFVPTKVVVSTNLLSKRWRY------LWKHV 41
>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 463 LRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTA-MQLHDFSEMQAFPTKLRYLCICL 639
LRY+ LP+++ T L EL NL + L FST + D M TKLRYL + L
Sbjct: 651 LRYLSLPLKMDDKTKL-ELG-DLVNLEY-LYGFSTQHSSVTDLLRM----TKLRYLAVSL 703
Query: 640 SE 645
SE
Sbjct: 704 SE 705
>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.9 bits (59), Expect = 6.4
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 463 LRYIELPIELITHTVLHELAAKCPNLTHMLLDFSTA-MQLHDFSEMQAFPTKLRYLCICL 639
LRY+ LP+++ T L EL NL + L FST + D M TKLRYL + L
Sbjct: 651 LRYLSLPLKMDDKTKL-ELG-DLVNLEY-LYGFSTQHSSVTDLLRM----TKLRYLAVSL 703
Query: 640 SE 645
SE
Sbjct: 704 SE 705
>At5g02700.1 68418.m00208 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 456
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
I +PD +L +I S++ R + + RRWR V +T
Sbjct: 29 INYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCET 66
>At3g28410.1 68416.m03549 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 465
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
I +PD +L +I S++ R + + RRWR V +T
Sbjct: 30 INYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCET 67
>At3g17540.1 68416.m02240 F-box family protein similar to
hypothetical protein GB:AAD18122 from [Arabidopsis
thaliana];contains Pfam PF00646: F-box domain; contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 396
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 232 RQMTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTK 363
R+ I LP ++ I S + + + ++ T C+RW + D +
Sbjct: 2 RKTMVISDLPHEIESEILSRVPTKSLAKLHTTCKRWYALFRDPR 45
>At3g16210.1 68416.m02046 F-box family protein contains F-box domain
Pfam:PF00646
Length = 360
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYD 357
LP+++ + I L+ +++ R VC+ WR + D
Sbjct: 5 LPEELAIEILVRLSMKDLARFRCVCKTWRDLIND 38
>At2g41170.1 68415.m05085 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
LPD L I L+ E+C M +VC R LW
Sbjct: 62 LPDLTLDCILEKLSPSELCAMTSVCSELRDKCVSDHLW 99
>At1g67390.1 68414.m07670 F-box family protein contains Pfam
PF00646: F-box domain
Length = 479
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
I KLPD VL+ I + L+ + + + + RW+ V
Sbjct: 43 ISKLPDDVLVMILASLSTEDALKTSVLSTRWKNV 76
>At1g51550.1 68414.m05802 F-box family protein similar to F-box
ZEITLUPE/FKF/LKP/ADAGIO proteins e.g. GI:13487068 from
[Arabidopsis thaliana]
Length = 478
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
I LPD LL I L I + C+R++ +A LW
Sbjct: 21 IINLPDDHLLTILLLLPVDSILSFSMTCKRYKSLACSDSLW 61
>At1g15680.1 68414.m01882 F-box family protein contains Pfam:PF00646
F-box domain
Length = 410
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 253 KLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
+LP+++L I + L I R +VC+ WR + T
Sbjct: 18 ELPEELLAEIVARLPFISITRFKSVCKGWRSLIEST 53
>At1g12870.1 68414.m01495 S locus F-box-related / SLF-related
contains F-box domain Pfam:PF00646; contains TIGRFAM
TIGR01640: F-box protein interaction domain; weakly
similar to self-incompatibility (S-) locus F-box
(GI:29420811) [Prunus mume]
Length = 416
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 175 VDTATIAITRDELSSSFRRRQ---MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
+D AI SS +RR M LPD V+ IF L + + R ++ ++WR
Sbjct: 3 MDEEKQAIVSSSSSSQRKRRYKKLMIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWR 61
>At5g41840.1 68418.m05095 F-box family protein contains F-box domain
Pfam:PF00646
Length = 540
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I LPD ++ +I S+L +E + +RW+
Sbjct: 16 ISGLPDALICHILSFLPTKEAASTTVLAKRWK 47
>At5g23850.1 68418.m02800 expressed protein
Length = 542
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = -1
Query: 505 LCGLSALLEALYNAATVQILLISALTVIPEN*RAILIFPASN*RASTISCRTQPSSIVC- 329
L + LLE AAT T+ P+ R + S T+ C ++ C
Sbjct: 59 LLDTTVLLEK--KAATTTTTKTQTQTITPKYPRPTTVITQSPKPEFTLHCSANETTASCP 116
Query: 328 -KQLPYDISHGVLDTRKCSIKPCPEVFRW 245
+ P S DT CP+ FRW
Sbjct: 117 SNKYPTTTSFEDDDTNHPPTATCPDYFRW 145
>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
Pfam:PF00646
Length = 422
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDT 360
I +LPD ++ I YL ++ + + +RWR + T
Sbjct: 25 ISQLPDSLITQILFYLQTKKAVTTSVLSKRWRSLWLST 62
>At4g26350.1 68417.m03788 F-box family protein contains F-box domain
Pfam:PF00646
Length = 431
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
M I + PD +LL I S++ +++ + + +RW
Sbjct: 1 MDIISQCPDHLLLRILSFIPTKDVIVTSLLSKRW 34
>At3g59230.1 68416.m06603 F-box family protein contains F-box domain
Pfam:PF00646
Length = 491
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
I LP+ ++ +I S+L+ +E + + R+WR
Sbjct: 14 INSLPEALIYHILSFLSTKEAAITSLLSRKWR 45
>At3g59210.1 68416.m06601 F-box family protein contains F-box domain
Pfam:PF00646
Length = 484
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWR-MVAYDTKLWTHV--SLRPEIS 399
I LPD +L I S L+ +E + + +RWR + A L V SL PE++
Sbjct: 9 INCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFDVLPSLHPEVA 62
>At3g59150.1 68416.m06594 F-box family protein contains F-box domain
Pfam:PF00646
Length = 509
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
I LP+ +L I SYL+ +E + + +RW
Sbjct: 49 ISNLPNDLLCRILSYLSTKEAALTSILSKRW 79
>At3g54910.1 68416.m06085 expressed protein various pedicted
proteins, Arabidopsis thaliana
Length = 373
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 451 FGPSLRYIEL-PIELITHTVLHELAAKCPNLTHMLLD 558
F PSL+ ++L + + LH L + CP L +L+D
Sbjct: 109 FLPSLKTLQLHSVRYLNEDSLHRLLSNCPVLEDLLVD 145
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 256 LPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
LPD L +IF +L+ + R + V +RW +V
Sbjct: 44 LPDDCLAHIFQFLSAGDRKRCSLVSKRWLLV 74
>At3g44080.1 68416.m04722 F-box family protein contains F-box domain
Pfam:PF00646
Length = 387
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWR 342
+++ LPD++L+ I S LT ++ + + +RW+
Sbjct: 8 SMDCLPDELLVEILSSLTTKQAVSTSLLSKRWK 40
>At3g13820.1 68416.m01745 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 415
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 238 MTTIEKLPDKVLLNIFSYLTHREICRMATVCRRW 339
MTT+ LP +VL I S + M + C++W
Sbjct: 1 MTTMSNLPAEVLEEILSRTPVTSLRTMRSTCKKW 34
>At2g26850.1 68415.m03221 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 371
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 244 TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMVAYDTKLW 369
+I LPD L I L E+C MA VC R LW
Sbjct: 61 SILDLPDLPLDCILELLPPSELCTMARVCSSLRERCVSDHLW 102
>At1g32020.1 68414.m03939 F-box family protein similar to heat shock
transcription factor HSF30-like protein GI:9759202 from
[Arabidopsis thaliana] ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 171
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 247 IEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
I LPD ++ I SYL ++ + + + +RW V
Sbjct: 6 ISTLPDHLVAKIVSYLGIKDSIKTSVLSKRWEFV 39
>At1g31350.1 68414.m03836 F-box family protein similar to
hypothetical protein GB:AAF24593 GI:6692128 from
[Arabidopsis thaliana] ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 395
Score = 27.5 bits (58), Expect = 8.4
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = +1
Query: 187 TIAITRDELSSSFRRRQMT------TIEKLPDKVLLNIFSYLTHREICRMATVCRRWRMV 348
+++ T E + RRR +T IE LPD + I L HR ++ VC RWR +
Sbjct: 10 SMSTTAAESPPAKRRRTVTGNENSALIEGLPDHIS-EICLSLVHRPSL-LSAVCTRWRRL 67
Query: 349 AYDTKLWTHVSL 384
Y + + SL
Sbjct: 68 LYSPEFPSFPSL 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,526,272
Number of Sequences: 28952
Number of extensions: 330202
Number of successful extensions: 1187
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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