Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10a13r
(780 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 33 0.21
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 33 0.21
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.28
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 31 0.65
At1g64185.1 68414.m07271 lactoylglutathione lyase family protein... 31 0.65
At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family prote... 31 0.86
At1g61080.1 68414.m06877 proline-rich family protein 30 1.5
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 30 1.5
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 30 1.5
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At2g28540.1 68415.m03467 expressed protein 29 4.6
At1g07135.1 68414.m00759 glycine-rich protein 29 4.6
At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein ... 28 6.0
At3g59690.1 68416.m06660 calmodulin-binding family protein simil... 28 6.0
At3g44713.1 68416.m04810 hypothetical protein 28 6.0
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 28 8.0
At3g21580.2 68416.m02722 expressed protein 28 8.0
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 28 8.0
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 33.1 bits (72), Expect = 0.21
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +2
Query: 359 PSVWIAST*TPSLALRRLELVFHR--GPAGSKPVTRATRPPSSRPALPTKCAPRLKPTRC 532
P++ AST PS + + R P G+ P +++PPS R PT PR R
Sbjct: 176 PTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSPRA 235
Query: 533 MVLNGAPVTLLRNVKNCPK-PRPTAGTP 613
L P L P+ P P A P
Sbjct: 236 ASLRADPPRLDAARPTTPRPPSPLADAP 263
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 33.1 bits (72), Expect = 0.21
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +2
Query: 359 PSVWIAST*TPSLALRRLELVFHR--GPAGSKPVTRATRPPSSRPALPTKCAPRLKPTRC 532
P++ AST PS + + R P G+ P +++PPS R PT PR R
Sbjct: 175 PTLRPASTRVPSQRITPHSVPSPRPSSPRGASPQAISSKPPSPRAEPPTLDTPRPPSPRA 234
Query: 533 MVLNGAPVTLLRNVKNCPK-PRPTAGTP 613
L P L P+ P P A P
Sbjct: 235 ASLRADPPRLDAARPTTPRPPSPLADAP 262
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 32.7 bits (71), Expect = 0.28
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 3/159 (1%)
Frame = -1
Query: 525 VGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLWNTNSNRLNARDGVYVEAIHTDGSTTG 346
+G++ G + R+L G + D +GP WN + N R + ++ +D + G
Sbjct: 305 IGYNRGDSAYNPSNRDLWGNRS-----DSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYG 359
Query: 345 --LGIGSAVANADFFPNGGNSQPGCTLSLCNHNRAWELFASTVTRNHLVGNQCSNMLQVS 172
G GS ++ F GN+ G S+ R +++ + + + +Q SN L
Sbjct: 360 RSYGAGSGLSGLSF---AGNTN-GFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGL 415
Query: 171 SNSCRGNRLNMGNDDLRKSGSGLF-RVNTGRRYPF*AIE 58
S S N+G+D + G N G R IE
Sbjct: 416 SRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRGIE 454
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 437 AGSKPVTRAT-RPPSSRPALPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTAGTP 613
+ S+P+ R RPP +P + +L PT + NG P+ + V++ P P PT T
Sbjct: 172 SASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQS-PVPVPTPVTE 230
Query: 614 LA 619
A
Sbjct: 231 SA 232
>At1g64185.1 68414.m07271 lactoylglutathione lyase family protein /
glyoxalase I family protein contains Pfam domain
PF00903: glyoxalase family protein
Length = 118
Score = 31.5 bits (68), Expect = 0.65
Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Frame = -1
Query: 741 WLSNQNTDINPTIRDAYLGKS-DVNVIVLDWRRLALSDYATAARGVPAVGRGLGQFLTFL 565
W+ + D+ R G VNV+ L W L A P+ + + L
Sbjct: 8 WILQLHRDVPKAARFYEKGLDFSVNVVTLRWAELQSGPLKLALMQAPSEHVMSEKGYSSL 67
Query: 564 NRVTGAPFNTMHLVGFSLGAHLVGNAGRELGGRVARVTGLD 442
T A NT LGA L G+ E+ G+VA V LD
Sbjct: 68 LSFTVADINTTISKLMELGAELDGSIKYEVHGKVASVRCLD 108
>At4g24140.1 68417.m03464 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas putida] GI:2822275, hydroxymuconic
semialdehyde hydrolase, Pseudomonas stutzeri, AF039534;
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 498
Score = 31.1 bits (67), Expect = 0.86
Identities = 28/113 (24%), Positives = 51/113 (45%)
Frame = -1
Query: 537 TMHLVGFSLGAHLVGNAGRELGGRVARVTGLDPAGPLWNTNSNRLNARDGVYVEAIHTDG 358
+ H+V SLG L + GG + +T L P P + R V ++ +
Sbjct: 290 SFHIVAHSLGCILALSLAARHGGLIKSLTLLAP--PYYPVPKGEKKPRQYV-MKKVAPRK 346
Query: 357 STTGLGIGSAVANADFFPNGGNSQPGCTLSLCNHNRAWELFASTVTRNHLVGN 199
+ +G+++A ++ + S+ C L +C H+R W+ A +TRN+ N
Sbjct: 347 VWPPIALGASMAC--WYEH--ISRTICLL-ICKHHRVWQFIAGVLTRNNRTVN 394
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 30.3 bits (65), Expect = 1.5
Identities = 30/102 (29%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Frame = +2
Query: 335 PMPRPVVLPSVWIAST*TPSLALRRLELVFHRGPAGS----KPVTRATRPPSSRPALPTK 502
P P P V+P A P L + L P + KP+ + PP P LPT
Sbjct: 460 PPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTT 519
Query: 503 CA---PRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTAGTPLA 619
A P P R V P P P P GT A
Sbjct: 520 IAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAA 561
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 198 GYRPDDFWSRLKQIVPKHDCGCKGSMYNQAESFHRSGRNRRWRQQIRC 341
G RPDD W ++ ++P C S+ N + S RN R RC
Sbjct: 2844 GVRPDDSWHSIRSLLPL--CIAPKSLQNDFIAMEVSMRNGRKHATFRC 2889
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 198 GYRPDDFWSRLKQIVPKHDCGCKGSMYNQAESFHRSGRNRRWRQQIRC 341
G RPDD W ++ ++P C S+ N + S RN R RC
Sbjct: 2844 GVRPDDSWHSIRSLLPL--CIAPKSLQNDFIAMEVSMRNGRKHATFRC 2889
>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 308
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 285 PGCTLSLCNHNRAWELFASTVTRNHLVGNQCSNMLQVSSNSC 160
P C+ S+C+ ++ WE F + + + M+Q+ N C
Sbjct: 239 PLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNRMVQILCNDC 280
>At2g28540.1 68415.m03467 expressed protein
Length = 655
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 559 SIKERQELSQTATDSGHSSSCSSIVRQSKSSPVQNNYVHVRFAEVSISDGRIDVSILVAE 738
S + + E +T T G S S S R S +P+ N Y + +E + +G ++ SILV +
Sbjct: 254 SSQYKAEHDETRTVFGSSYSDS---RGSNIAPISNGYTEMPLSEPNQLNGSLNHSILVPD 310
Query: 739 PA 744
A
Sbjct: 311 KA 312
>At1g07135.1 68414.m00759 glycine-rich protein
Length = 155
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = -1
Query: 495 GNAGRELGGRVARVTGLDPAGPLWNTNSNRLNARDGVYVEAIHTDGSTTGLGIGSA 328
G G GG AR G G +++S + + G V IHT G LG GSA
Sbjct: 67 GGGGGGRGGGGARSGGRSRGGGGGSSSSRSRDWKRGGGVVPIHTGGGNGSLGGGSA 122
>At5g15760.1 68418.m01843 plastid-specific 30S ribosomal protein 3,
putative / PSRP-3, putative similar to SP|P82412
Plastid-specific 30S ribosomal protein 3, chloroplast
precursor (PSRP-3) {Spinacia oleracea}; contains Pfam
profile PF04839: Plastid and cyanobacterial ribosomal
protein (PSRP-3 / Ycf65)
Length = 183
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 281 PG*EFPPFGKKSALATADPMPRP-VVLPSVWI 373
P E PP GKK P+ +P VVL VW+
Sbjct: 80 PESESPPLGKKKMRVLVKPLEKPKVVLKFVWM 111
>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 517
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 434 PAGSKPVTRATRPPSSRPALPTKCAPRLKPTRCMVLNGAPVTLLRN 571
P + P +PPS +P P +PR+ R V P L++N
Sbjct: 124 PRVAYPQVHYPKPPSPKPPSPRAVSPRIVQRREFVHRPEPSLLVKN 169
>At3g44713.1 68416.m04810 hypothetical protein
Length = 626
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 373 NPHRWQYNWSWHRICCRQ 320
N H W YNWS R+ CR+
Sbjct: 292 NDHSWLYNWS-RRVTCRK 308
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 207 VGNQCSNMLQVSSNSCRGNRLNMGNDDLRK 118
+GN C N+L+V CRG G D LRK
Sbjct: 441 LGNGCPNLLKVKVKKCRG-VTTQGADLLRK 469
>At3g21580.2 68416.m02722 expressed protein
Length = 384
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 350 VVLP-SVWIAST*TPSLALRRLELVFHRGPAGSKPVTRATRPPSSRPALP 496
+VLP VWI SL L + G G+ P+ ++ PPSS +LP
Sbjct: 145 LVLPRQVWIDQLARVSLLSGILFITLGLGSDGAPPMLQSRTPPSSITSLP 194
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/122 (21%), Positives = 52/122 (42%)
Frame = +2
Query: 299 PFGKKSALATADPMPRPVVLPSVWIAST*TPSLALRRLELVFHRGPAGSKPVTRATRPPS 478
P +L+ + P P P ++ + P L+L P S P++ + PS
Sbjct: 29 PSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPP--PPPPSSSPLSSLS--PS 84
Query: 479 SRPALPTKCAPRLKPTRCMVLNGAPVTLLRNVKNCPKPRPTAGTPLAAVA*SDRASLLQS 658
P+ P+ P+ + P++L + P P P + +PL++++ S +S +
Sbjct: 85 LSPSPPSSSPSSAPPSSLSPSSPPPLSLS---PSSPPPPPPSSSPLSSLSPSSSSSTYSN 141
Query: 659 KT 664
+T
Sbjct: 142 QT 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,629,599
Number of Sequences: 28952
Number of extensions: 434433
Number of successful extensions: 1374
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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