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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01r
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm...    31   1.1  
At4g29220.1 68417.m04180 phosphofructokinase family protein simi...    30   1.8  
At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C...    30   1.8  
At4g17130.1 68417.m02579 hypothetical protein                          29   3.2  
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    29   3.2  
At1g18590.1 68414.m02318 sulfotransferase family protein similar...    29   3.2  
At1g74100.1 68414.m08582 sulfotransferase family protein similar...    29   4.3  
At3g29310.1 68416.m03680 calmodulin-binding protein-related            28   5.6  
At1g31380.1 68414.m03841 hypothetical protein                          28   5.6  
At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1) c...    27   9.8  
At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1) c...    27   9.8  
At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein /...    27   9.8  
At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /...    27   9.8  
At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein /...    27   9.8  
At1g05660.1 68414.m00587 polygalacturonase, putative / pectinase...    27   9.8  

>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
           gamma-amino-N-butyrate transaminase / GABA transaminase
           / beta-alanine--oxoglutarate aminotransferase identical
           to gamma-aminobutyrate transaminase subunit precursor
           [Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
           contains Pfam profile PF00202: aminotransferase, class
           III; identical to cDNA gamma-aminobutyrate transaminase
           subunit precursor, nuclear gene for mitochondrial
           product GI:14030434
          Length = 504

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 626 ERQNLVEQLIVNVIDRITSGIQERGLDPIYIEKAEGDYTF 507
           E++N V     +++   T+G Q   LDP+ I K+EG Y +
Sbjct: 43  EKKNTVGSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVY 82


>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 473

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = -1

Query: 581 RITSGIQERGLDPIYIEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDVTFNILRS 402
           +I   IQ+RG++ +YI   +G      +           +A+ G    + ND+   I+  
Sbjct: 172 KIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLKVAVAGIPKTIDNDIP--IIDR 229

Query: 401 KFSVDLTLPKLSASSVAVNGEATIF 327
            F  D  + +   +  A + EAT F
Sbjct: 230 SFGFDTAVEEAQRAINAAHVEATSF 254


>At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain;
          Length = 514

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = +3

Query: 432 DDNVAGAFESQVGYGARCAEDV--RNWESVIAFGFFDVDWVE---STLLDTGSDAIDDVH 596
           DD+  G F+    +GA+C++ V  R  E+++  G F VD  E   S  L T S     +H
Sbjct: 140 DDHFFGVFDGHGEFGAQCSQFVKRRLCENLLRHGRFRVDPAEACNSAFLTTNS----QLH 195

Query: 597 NQLLDQILS 623
             L+D  +S
Sbjct: 196 ADLVDDSMS 204


>At4g17130.1 68417.m02579 hypothetical protein
          Length = 747

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 39  NIVDDEEDDALNNLPDLVVVSFEKFWKFVIQSVIQPLGYVLAEENNFES 185
           +++  EED  LN + D +V+    + +   ++ + PLG ++AE+  F++
Sbjct: 247 SVLSSEEDKNLN-MVDAIVMDKSIYKQQTAEAFLSPLGPLIAEDEKFDN 294


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 584 DRITSGIQERGLDPIYIEKAEGDYTFPISDIFSASGTVAHLALEGAS 444
           + I S IQE   DPI  ++ EGD ++PI  I  A     H+  E A+
Sbjct: 317 EEILSTIQESNTDPI--KETEGDASYPIDVIEKAITEEKHVVDEPAN 361


>At1g18590.1 68414.m02318 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 346

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 263 WRPDEGLRQQGFHYWLQPI 319
           WRP +   + G H+WLQP+
Sbjct: 46  WRPKDPFVEYGGHWWLQPL 64


>At1g74100.1 68414.m08582 sulfotransferase family protein similar to
           SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-)
           (F4-ST) {Flaveria chloraefolia}; contains Pfam profile
           PF00685: Sulfotransferase domain
          Length = 338

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 263 WRPDEGLRQQGFHYW 307
           WRPDE L Q G H+W
Sbjct: 38  WRPDEILTQYGGHWW 52


>At3g29310.1 68416.m03680 calmodulin-binding protein-related
          Length = 551

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 597 CERHRSHHFRYPRAWTRPNLHRKS 526
           C RH++HH   P+  T PN   KS
Sbjct: 13  CSRHQNHHNNTPQFATSPNCCNKS 36


>At1g31380.1 68414.m03841 hypothetical protein
          Length = 175

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 489 EDVRNWESVIAF---GFFDVDWVESTLLDTGSDAIDDVHNQLLD 611
           +D+ N  S +++     F +DW+E  L D G   I ++  +L D
Sbjct: 109 DDLANAYSTLSYVTKAGFKLDWLEKDLKDVGETRIQEIEEELKD 152


>At5g04940.2 68418.m00523 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 165 EENNFESGLNIANSKNG 215
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At5g04940.1 68418.m00522 SET domain-containing protein (SUVH1)
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH1 (SUVH1)  GI:13517742
          Length = 670

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 165 EENNFESGLNIANSKNG 215
           E  NFESG+N+A+ +NG
Sbjct: 137 ENMNFESGINVADRENG 153


>At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           profile: PF00650 CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}; similar to Phosphatidylinositol Transfer
           Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
          Length = 249

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 585 DDVHNQLLDQILSFS-LKVNF*GHSSDAGSESNKY 686
           D++ N+LL+ +     L+V F G +SDAG    KY
Sbjct: 154 DNLSNKLLEDLFDMEQLEVAFGGKNSDAGFNFEKY 188


>At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           profile: PF00650 CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}; similar to Phosphatidylinositol Transfer
           Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
          Length = 314

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 585 DDVHNQLLDQILSFS-LKVNF*GHSSDAGSESNKY 686
           D++ N+LL+ +     L+V F G +SDAG    KY
Sbjct: 219 DNLSNKLLEDLFDMEQLEVAFGGKNSDAGFNFEKY 253


>At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           profile: PF00650 CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh1p (GI:|2739044)
           {Glycine max}; similar to Phosphatidylinositol Transfer
           Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae]
          Length = 249

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 585 DDVHNQLLDQILSFS-LKVNF*GHSSDAGSESNKY 686
           D++ N+LL+ +     L+V F G +SDAG    KY
Sbjct: 154 DNLSNKLLEDLFDMEQLEVAFGGKNSDAGFNFEKY 188


>At1g05660.1 68414.m00587 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 503 ISDIFSASGTVAHLALEGASNVVVNDV 423
           IS + S +  V H+ L G +NVVV +V
Sbjct: 158 ISGVKSMNSQVTHMTLNGCTNVVVRNV 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,206
Number of Sequences: 28952
Number of extensions: 266960
Number of successful extensions: 885
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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