Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C13
         (347 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             27   2.6  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    26   7.9  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 183 ISGSRARFQLXGNSGRKHSRCCTSILRKFSG 275
           +SGS   FQ   NS     R CTS++ K  G
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDKTEG 145


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
           profiles: PF00063 myosin head (motor domain), PF00612 IQ
           calmodulin-binding motif
          Length = 1126

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +3

Query: 93  KLKEH-GASSCISGKRGR 143
           KLK+H  A+SC  G+RGR
Sbjct: 610 KLKQHLNANSCFKGERGR 627


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,349,750
Number of Sequences: 28952
Number of extensions: 98424
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)