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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C08
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80460.1 68414.m09423 glycerol kinase, putative similar to gl...    33   0.22 
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    32   0.29 
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    32   0.29 
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    30   1.2  
At4g18375.2 68417.m02727 KH domain-containing protein contains s...    29   3.5  
At4g18375.1 68417.m02726 KH domain-containing protein contains s...    29   3.5  
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai...    29   3.5  
At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family pr...    28   4.7  
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ...    28   4.7  
At2g45850.2 68415.m05703 DNA-binding family protein contains a A...    28   6.1  
At2g45850.1 68415.m05702 DNA-binding family protein contains a A...    28   6.1  
At5g24930.1 68418.m02952 zinc finger (B-box type) family protein...    27   8.1  
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes...    27   8.1  

>At1g80460.1 68414.m09423 glycerol kinase, putative similar to
           glycerol kinase (ATP:glycerol 3-phosphotransferase,
           Glycerokinase, GK)[Mycobacterium tuberculosis]
           Swiss-Prot:O69664
          Length = 522

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = +3

Query: 153 MPAQPYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAAS 323
           +PA+  P + SN+ V G  C G P  G      +A C+G   A   G   R+ EA S
Sbjct: 220 IPAEILPKIVSNSEVIGEICKGWPIPGIK----IAGCLGDQHAAMLGQACRKGEAKS 272


>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 MPAQPYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGG-AGAVPYGSLPREQEAASPT 329
           M A P P  YS     G    G P  GY   +      GG +G    GS PR QEA+   
Sbjct: 205 MEAVPPPTSYSG----GPPSYGGPRGGYGSDAPSTGGRGGRSGGYDGGSAPRRQEASYED 260

Query: 330 SALQRAR 350
           +A ++ +
Sbjct: 261 AATEKVK 267


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 153 MPAQPYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGG-AGAVPYGSLPREQEAASPT 329
           M A P P  YS     G    G P  GY   +      GG +G    GS PR QEA+   
Sbjct: 205 MEAVPPPTSYSG----GPPSYGGPRGGYGSDAPSTGGRGGRSGGYDGGSAPRRQEASYED 260

Query: 330 SALQRAR 350
           +A ++ +
Sbjct: 261 AATEKVK 267


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +3

Query: 183 SNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAASPTS 332
           S  +  G   MG    G   P +M+  MGGA   P GSLP+      P S
Sbjct: 399 SGGLPPGFRPMGGGGGGGGGPQSMSMPMGGAMGGPMGSLPQMGGGPGPMS 448


>At4g18375.2 68417.m02727 KH domain-containing protein contains
           similarity to RNA-binding KH-domains PF:00013
          Length = 606

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 216 GSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAASPTSALQRAR 350
           GS + GY+ PS M+S    +G   YGS P        T      R
Sbjct: 487 GSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGR 531


>At4g18375.1 68417.m02726 KH domain-containing protein contains
           similarity to RNA-binding KH-domains PF:00013
          Length = 532

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 216 GSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAASPTSALQRAR 350
           GS + GY+ PS M+S    +G   YGS P        T      R
Sbjct: 487 GSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGR 531


>At1g44910.1 68414.m05146 FF domain-containing protein / WW
           domain-containing protein contains Pfam profiles
           PF01846: FF domain, PF00397: WW domain
          Length = 946

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 171 PNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAASPTSALQ 341
           P + +N ++  GS    P+   +PP T  +  G   + PY  +P       PTS +Q
Sbjct: 71  PYIQTNKILTSGSTQPQPN---APPMTGFATSGPPFSSPYTFVPSSYPQQQPTSLVQ 124


>At5g58010.1 68418.m07258 basic helix-loop-helix (bHLH) family
           protein bHLH transcription factor GBOF-1, Tulipa
           gesneriana, EMBL:AF185269; contains Pfam profile
           PF00010: Helix-loop-helix DNA-binding domain
          Length = 297

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +3

Query: 165 PYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQEAASPTSALQR 344
           P+P+ + +   +GG  MGS   G  P  T+++              R  +A  P S  +R
Sbjct: 57  PFPDQFHHPQESGGPTMGSQE-GLQPQGTVSTTSAPVVRQKPRVRARRGQATDPHSIAER 115

Query: 345 ARNDKTYRR 371
            R ++   R
Sbjct: 116 LRRERIAER 124


>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 453

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 141 GMGCMPAQPYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQ 311
           G+ C    P+P+   +N  +  +    PSVG+   S M   M       YG++PR Q
Sbjct: 147 GVACKFHHPHPHSQPSNGHSAYAMSSFPSVGFPYASGMT--MVSLPPATYGAIPRPQ 201


>At2g45850.2 68415.m05703 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 348

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 198 AGGSCMGSPSVGYSPPSTMASCMGGAGAVPY 290
           +G +  GSPS+   P  ++A+  GGAGA+P+
Sbjct: 51  SGSTGFGSPSLHGDP--SLATAAGGAGALPH 79


>At2g45850.1 68415.m05702 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 348

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 198 AGGSCMGSPSVGYSPPSTMASCMGGAGAVPY 290
           +G +  GSPS+   P  ++A+  GGAGA+P+
Sbjct: 51  SGSTGFGSPSLHGDP--SLATAAGGAGALPH 79


>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
           similar to CONSTANS-like protein 1 GI:4091804 from
           [Malus x domestica]
          Length = 406

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
 Frame = +3

Query: 132 YVNGMGCMPAQPYPNLYSNNMVAGGSCMGSPSVGYSPPSTMASCMGGAGAVPYGSLPREQ 311
           Y  G  C+      +     +V  G  +   S  Y  P+T  +  G   AVP  S  RE 
Sbjct: 282 YGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPYGGPATSGADPGTQRAVPLTSAEREA 341

Query: 312 EAASPTSALQRARNDKTY----RRSYTHAKP 392
                    +  + +KT     R++Y   +P
Sbjct: 342 RVMRYREKRKNRKFEKTIRYASRKAYAEMRP 372


>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
           from this gene
          Length = 1035

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 267 GGAGAVPYGSLPREQEAASPTSALQRARNDKTYRRS 374
           G +    +GSL R++   +PTS ++RA   K  +RS
Sbjct: 86  GSSNGSGFGSLGRKEVLTTPTSRVKRALGLKMLKRS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,014
Number of Sequences: 28952
Number of extensions: 245453
Number of successful extensions: 819
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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