Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A18
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    35   0.041
At2g39900.1 68415.m04904 LIM domain-containing protein similar t...    34   0.094
At3g61690.1 68416.m06913 expressed protein                             30   1.2  
At4g03500.1 68417.m00477 ankyrin repeat family protein contains ...    29   2.0  
At3g47230.1 68416.m05128 expressed protein                             29   3.5  
At3g60850.1 68416.m06807 expressed protein                             28   4.7  
At4g26940.2 68417.m03877 galactosyltransferase family protein co...    28   6.1  
At4g26940.1 68417.m03876 galactosyltransferase family protein co...    28   6.1  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   6.1  
At3g54240.1 68416.m05995 hydrolase, alpha/beta fold family prote...    28   6.1  
At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative...    28   6.1  
At1g01020.1 68414.m00002 transmembrane ARV1-like family protein ...    28   6.1  
At5g15710.1 68418.m01837 F-box family protein unusual floral org...    27   8.1  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    27   8.1  

>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
 Frame = +2

Query: 326 LCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGK-TYCKXXYTTL 502
           +C GC  +I     L     L WH  C +C  C Q + E    F   G   + K  Y   
Sbjct: 171 ICAGCNMEIGHGRFLNCLNSL-WHPECFRCYGCSQPISE--YEFSTSGNYPFHKACYRER 227

Query: 503 FGTKCDKCGAXFSKN 547
           +  KCD C      N
Sbjct: 228 YHPKCDVCSHFIPTN 242


>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 200

 Score = 33.9 bits (74), Expect = 0.094
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +2

Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
           C  C   ++   +L  A  + +H AC KC  C+  L  S      +G  YC+  +  LF 
Sbjct: 10  CRACEKTVYPVELLS-ADGISYHKACFKCSHCKSRLQLS-NYSSMEGVVYCRPHFEQLF- 66

Query: 509 TKCDKCGAXFSKN 547
               K    FSKN
Sbjct: 67  ----KESGSFSKN 75


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
 Frame = +3

Query: 306 QKSSGSRCAS-AAEVRSTTSTSSGWP-LTWSGTRPA*SVRN----AGSSST 440
           +++ GSR  S A+ VRS TS+ S W   T  G++PA   RN    +G++ST
Sbjct: 785 ERTVGSRSVSGASSVRSRTSSESSWDGSTTRGSKPAKDRRNRKVVSGAAST 835


>At4g03500.1 68417.m00477 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 652

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 175 RSLSQNHVTLPRNNVR*TP 119
           R +++NH  +PRNNVR TP
Sbjct: 33  RRVAENHQAIPRNNVRSTP 51


>At3g47230.1 68416.m05128 expressed protein
          Length = 277

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +1

Query: 172 FERWFSVVVSDGDGQRRWWRADTVPTRHD--APSQYH 276
           FER    +VS GD   RW+  D  P   D  +P  YH
Sbjct: 129 FERSHPFLVSFGDATVRWYPLDLTPFGRDISSPVSYH 165


>At3g60850.1 68416.m06807 expressed protein 
          Length = 648

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 233 LIQSPPDMMHHHNIMDTSSHVE 298
           L+QSPP ++HHH+  D +S V+
Sbjct: 23  LVQSPPSILHHHH--DHNSEVD 42


>At4g26940.2 68417.m03877 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 306

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 254 MMHHHNIMDTSSHVEMMPKKLRLSLCVG--CGG 346
           + HHH  ++ S+    + KK  L LC+G  C G
Sbjct: 3   LKHHHRGLELSASKSFVSKKWTLFLCIGFFCAG 35


>At4g26940.1 68417.m03876 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 407

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 254 MMHHHNIMDTSSHVEMMPKKLRLSLCVG--CGG 346
           + HHH  ++ S+    + KK  L LC+G  C G
Sbjct: 3   LKHHHRGLELSASKSFVSKKWTLFLCIGFFCAG 35


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +3

Query: 309 KSSGSRCASAAEVRSTTSTSSGWPLTWSGTRPA*SVRNAGSSSTN 443
           KS   RC+SA   +STT+T+  +P +  G  P+      GS S+N
Sbjct: 433 KSYIPRCSSAPVTQSTTTTAHTYPSS-PGVPPSQPPMVTGSGSSN 476


>At3g54240.1 68416.m05995 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22862|ESTE_PSEFL Arylesterase (EC
           3.1.1.2) (Aryl-ester hydrolase) {Pseudomonas
           fluorescens}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 350

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 571 EHIPHRLFXMLRLCPTTYTW 630
           ++IPHRL     LCP T +W
Sbjct: 157 KYIPHRLAGATLLCPVTNSW 176


>At3g13160.1 68416.m01646 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 394

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 228 PPPPLAITITDDHTEPTFEVSRKTTSLCRVTTFDKH 121
           PP P  IT+ +D  +P F ++ K    C+   F K+
Sbjct: 36  PPKPSLITLVNDERDPKF-ITEKFKKACQAEWFRKN 70


>At1g47240.1 68414.m05230 NRAMP metal ion transporter 2, putative
           (NRAMP2) similar to metal transporter Nramp3
           [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of
           the natural resistance-associated macrophage protein
           (NRAMP) metal transporter family, PMID:11500563
          Length = 530

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 237 ISPPPPPLAITITDDHTEPTFEVSRK 160
           + PPPP  ++  TD  +E  FE + K
Sbjct: 17  LPPPPPSQSLPSTDSESEAAFETNEK 42


>At1g01020.1 68414.m00002 transmembrane ARV1-like family protein
           contains similarity to ARV1 [Homo sapiens]
           gi|12044055|gb|AAG47671
          Length = 128

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTC 454
           CVGCG ++   +I + +P    +   +KC  C++  DE   C
Sbjct: 8   CVGCGFRVKSLFI-QYSPG---NIRLMKCGNCKEVADEYIEC 45


>At5g15710.1 68418.m01837 F-box family protein unusual floral organs
           protein UFO - Arabidopsis thaliana, PIR:S57710
          Length = 448

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 321 SRCASAAEVRSTTSTSSGWPLTWSGTRPA*SVRNAGSSSTNPAR 452
           S  A   +  S+TS+    PL  SG+R    +   GS +T+P+R
Sbjct: 27  SASAKNGDEESSTSSKQVSPLKGSGSRNTSPLGRVGSRNTSPSR 70


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +2

Query: 518 DKCGAXFSKNDFVMRAKT---NIYHIDCFXCCACARQLI 625
           DKC A   K  +VM   T   N YH  CF C  C   L+
Sbjct: 8   DKCKAC-DKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLV 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,279
Number of Sequences: 28952
Number of extensions: 288700
Number of successful extensions: 1125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)