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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A08
         (884 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07790.1 68414.m00843 histone H2B, putative strong similarity...   103   2e-22
At3g53650.1 68416.m05926 histone H2B, putative similar to histon...   102   3e-22
At3g09480.1 68416.m01127 histone H2B, putative similar to histon...   101   8e-22
At5g59910.1 68418.m07513 histone H2B nearly identical to histone...    99   2e-21
At2g37470.1 68415.m04596 histone H2B, putative strong similarity...    99   2e-21
At5g22880.1 68418.m02676 histone H2B, putative strong similarity...    99   3e-21
At2g28720.1 68415.m03491 histone H2B, putative strong similarity...    99   4e-21
At5g02570.1 68418.m00191 histone H2B, putative similar to histon...    98   6e-21
At3g46030.1 68416.m04980 histone H2B, putative strong similarity...    97   1e-20
At3g45980.1 68416.m04975 histone H2B identical to histone H2B Ar...    97   1e-20
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    88   6e-18
At5g20970.1 68418.m02493 heat shock family protein contains simi...    30   2.3  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    28   9.5  

>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
           histone H2B Arabidopsis thaliana GI:2407802, Gossypium
           hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
           Capsicum annuum SP|O49118; contains Pfam profile PF00125
           Core histone H2A/H2B/H3/H4
          Length = 148

 Score =  103 bits (247), Expect = 2e-22
 Identities = 55/136 (40%), Positives = 84/136 (61%)
 Frame = +1

Query: 43  KILASEKKKNNNNKMAPTKVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLR 222
           K  A+E+    N         KKP K+ +K+               N +++ IY++K+L+
Sbjct: 12  KKTAAERPVEENKAAEKAPAEKKP-KAGKKLPPKEAGDKKKKRSKKNVETYKIYIFKVLK 70

Query: 223 AVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGE 402
            V  D +GIS K+M IMN+F+ND+ EK+A E+ +L  + KK T+ SREIQ+AV+L++PGE
Sbjct: 71  QVHPD-IGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGE 129

Query: 403 LATHANSEGMKAISMY 450
           LA HA SEG KA++ +
Sbjct: 130 LAKHAVSEGTKAVTKF 145


>At3g53650.1 68416.m05926 histone H2B, putative similar to histone
           H2B from Lycopersicon esculentum, PIR:T06389 GI:3021483,
           Gossypium hirsutum SP|O22582, Capsicum annuum SP|O49118;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 138

 Score =  102 bits (245), Expect = 3e-22
 Identities = 54/133 (40%), Positives = 82/133 (61%)
 Frame = +1

Query: 52  ASEKKKNNNNKMAPTKVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRAVT 231
           A+EKK             K P K+ +K+               N +++ IY++K+L+ V 
Sbjct: 5   AAEKKPAGKKPAEKAPAEKLP-KAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLKQVH 63

Query: 232 QDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELAT 411
            D +GIS K+M IMN+F+ND+ EK+A E+ RL  + KK T+ SREIQ+AV+L++PGEL+ 
Sbjct: 64  PD-IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELSK 122

Query: 412 HANSEGMKAISMY 450
           HA SEG KA++ +
Sbjct: 123 HAVSEGTKAVTKF 135


>At3g09480.1 68416.m01127 histone H2B, putative similar to histone
           from Arabidopsis thaliana GI:2407802, Gossypium hirsutum
           SP|O22582, H2B-3 GB:CAA12231 from [Lycopersicon
           esculentum]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 126

 Score =  101 bits (241), Expect = 8e-22
 Identities = 54/124 (43%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
 Frame = +1

Query: 85  MAPT--KVPKKPLKSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRAVTQDNLGISRK 258
           MAP   K P +     +K +              + +++ IYL+K+L+ V  D +GIS K
Sbjct: 1   MAPKAEKKPSEKAPKADKKITKEGGSERKKKTKKSTETYKIYLFKVLKQVHPD-IGISGK 59

Query: 259 SMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELATHANSEGMKA 438
           +M IMN+F+ND  EKIA+E+ RL  + KK T+ SREIQ+AV+L++PGELA HA SEG KA
Sbjct: 60  AMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA 119

Query: 439 ISMY 450
           ++ +
Sbjct: 120 VTKF 123


>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
           H2B Arabidopsis thaliana GI:2407802; contains Pfam
           profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 150

 Score =   99 bits (238), Expect = 2e-21
 Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
 Frame = +1

Query: 52  ASEKKKNNNNKMAPTKVPKKPL--KSMEKVVDXXXXXXXXXXXXXNYQSFSIYLYKLLRA 225
           ASEK     +K       KKP   K + K                + +++ IY++K+L+ 
Sbjct: 15  ASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKK-SVETYKIYIFKVLKQ 73

Query: 226 VTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGEL 405
           V  D +GIS K+M IMN+F+ND+ EK+A EA +L  + KK T+ SREIQ+AV+L++PGEL
Sbjct: 74  VHPD-IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGEL 132

Query: 406 ATHANSEGMKAISMY 450
           A HA SEG KA++ +
Sbjct: 133 AKHAVSEGTKAVTKF 147


>At2g37470.1 68415.m04596 histone H2B, putative strong similarity to
           histone H2B from Lycopersicon esculentum GI:3021483,
           GI:3021485, Capsicum annuum SP|O49118; contains Pfam
           profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 138

 Score =   99 bits (238), Expect = 2e-21
 Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
 Frame = +1

Query: 52  ASEKKKNNNNKMAPTKVPKKPLKSMEKVV--DXXXXXXXXXXXXXNYQSFSIYLYKLLRA 225
           A+EKK     K    K P + L   EK +  D             + +++ IY++K+L+ 
Sbjct: 5   AAEKKPAE--KKPAGKAPAEKLPKAEKKISKDAGGSEKKKKKSKKSVETYKIYIFKVLKQ 62

Query: 226 VTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGEL 405
           V  D +GIS K+M IMN+F+ND+ EK+A E+ +L  + KK T+ SREIQ+AV+L++PGEL
Sbjct: 63  VHPD-VGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGEL 121

Query: 406 ATHANSEGMKAISMY 450
           A HA SEG KA++ +
Sbjct: 122 AKHAVSEGTKAVTKF 136


>At5g22880.1 68418.m02676 histone H2B, putative strong similarity to
           histone H2B-3 Lycopersicon esculentum GI:3021485, H2B
           Gossypium hirsutum SP|O22582; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 145

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 46/90 (51%), Positives = 70/90 (77%)
 Frame = +1

Query: 181 NYQSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGS 360
           N +++ IY++K+L+ V  D +GIS K+M IMN+F+ND+ EK+A E+ +L  + KK T+ S
Sbjct: 54  NVETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITS 112

Query: 361 REIQSAVKLLVPGELATHANSEGMKAISMY 450
           REIQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 113 REIQTAVRLVLPGELAKHAVSEGTKAVTKF 142


>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
           histone H2B Arabidopsis thaliana GI:2407802, Gossypium
           hirsutum SP|O22582; contains Pfam profile PF00125 Core
           histone H2A/H2B/H3/H4
          Length = 151

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 46/88 (52%), Positives = 69/88 (78%)
 Frame = +1

Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
           +++ IY++K+L+ V  D +GIS K+M IMN+F+ND+ EK+A EA +L  + KK T+ SRE
Sbjct: 62  ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
           IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKF 148


>At5g02570.1 68418.m00191 histone H2B, putative similar to histone
           H2B-2 Lycopersicon esculentum GI:3021483, Gossypium
           hirsutum SP|O22582, Asparagus officinalis GI:563329;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 132

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 46/88 (52%), Positives = 69/88 (78%)
 Frame = +1

Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
           +++ IY++K+L+ V  D +GIS K+M IMN+F+ND+ EK+A E+ RL  + KK T+ SRE
Sbjct: 43  ETYKIYIFKVLKQVHPD-IGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 101

Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
           IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 102 IQTAVRLVLPGELAKHAVSEGTKAVTKF 129


>At3g46030.1 68416.m04980 histone H2B, putative strong similarity to
           histone H2B Arabidopsis thaliana GI:2407802, Gossypium
           hirsutum SP|O22582, Lycopersicon esculentum GI:3021489;
           contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
          Length = 145

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/88 (51%), Positives = 69/88 (78%)
 Frame = +1

Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
           +++ IY++K+L+ V  D +GIS K+M IMN+F+ND+ EK+A E+ +L  + KK T+ SRE
Sbjct: 56  ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 114

Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
           IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 115 IQTAVRLVLPGELAKHAVSEGTKAVTKF 142


>At3g45980.1 68416.m04975 histone H2B identical to histone H2B
           Arabidopsis thaliana GI:2407802; contains Pfam profile
           PF00125 Core histone H2A/H2B/H3/H4
          Length = 150

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 45/88 (51%), Positives = 69/88 (78%)
 Frame = +1

Query: 187 QSFSIYLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSRE 366
           +++ IY++K+L+ V  D +GIS K+M IMN+F+ND+ EK+A E+ +L  + KK T+ SRE
Sbjct: 61  ETYKIYIFKVLKQVHPD-IGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 119

Query: 367 IQSAVKLLVPGELATHANSEGMKAISMY 450
           IQ+AV+L++PGELA HA SEG KA++ +
Sbjct: 120 IQTAVRLVLPGELAKHAVSEGTKAVTKF 147


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 42/83 (50%), Positives = 63/83 (75%)
 Frame = +1

Query: 202 YLYKLLRAVTQDNLGISRKSMLIMNNFVNDMLEKIAVEAGRLVAHGKKNTLGSREIQSAV 381
           Y+YK+++ V  D LGI+ K+M ++N F+ DM E+IA EA RL  + K+ TL SREI++AV
Sbjct: 154 YVYKVMKQVHPD-LGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAV 212

Query: 382 KLLVPGELATHANSEGMKAISMY 450
           +L++PGEL+ HA +EG KA+S +
Sbjct: 213 RLVLPGELSRHAVAEGSKAVSNF 235


>At5g20970.1 68418.m02493 heat shock family protein contains
           similarity to Swiss-Prot:P27397 18.0 kDa class I heat
           shock protein [Daucus carota]
          Length = 249

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 339 AVGDQPSGFHGDLLQHIVNEVIHDQHRLPRDAQVVLRD 226
           A+ ++PSG   D L+H   ++ HD  +L  DAQ   R+
Sbjct: 128 AMVEKPSGGKTDQLKHDAQQLKHDAQQLKHDAQQKARE 165


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 292 MLEKIAVEAGRLVAHGKKNTLGSREIQSAVKLLVPGELATHANSEGMKAISM 447
           +++ +  +    + HGK   LG    +  +K +V   LA HA+S G+   S+
Sbjct: 470 IMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVEWLLANHADSTGLSTDSL 521


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,471,486
Number of Sequences: 28952
Number of extensions: 218786
Number of successful extensions: 613
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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