Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_A06
(916 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03260.1 68417.m00445 leucine-rich repeat family protein cont... 32 0.61
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 30 2.5
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) severa... 29 3.2
At5g43030.1 68418.m05250 DC1 domain-containing protein contains ... 29 4.3
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 29 4.3
At1g32570.1 68414.m04019 hypothetical protein 29 4.3
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi... 28 7.5
At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA) ide... 28 9.9
At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog... 28 9.9
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 28 9.9
At3g50370.1 68416.m05508 expressed protein 28 9.9
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 9.9
>At4g03260.1 68417.m00445 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 677
Score = 31.9 bits (69), Expect = 0.61
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Frame = +2
Query: 302 TALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQDQ--- 472
T+L Q+ +N + D L++ +L P I D + + P YSS HS S D
Sbjct: 184 TSLYGEQMDNSNSQTPHDSPLMVRSNSL---PNIADSSSEKSSPFKYSSHHSRSSDDLHA 240
Query: 473 ------GKIQHQVDEEALSNED 520
K H+ DEE ED
Sbjct: 241 LDTRQTDKSVHETDEEVKQEED 262
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 29.9 bits (64), Expect = 2.5
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Frame = +2
Query: 179 QEKPRE--ELP-TRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSG 349
Q PR E P T L+ RS ++ SS + G + R ++ + NQI + G
Sbjct: 897 QTSPRSQSEYPGTTKLKQRSERHEGVVSSPSSTILEGGSVSNRMSSTSGNQIVGVDEEEG 956
Query: 350 GDGCLLLERTTLSGIPL-IQDDNDQGWRPDAYSSEHSMSQ 466
G+ L T L+ +P+ + N P SSE S+++
Sbjct: 957 GNFEFRLPETALTEVPMKLPSRNLIRSPPIKESSESSLTE 996
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several
homeodomain proteins;
Length = 575
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/78 (23%), Positives = 29/78 (37%)
Frame = +2
Query: 164 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 343
SS +AQ++P P R R N+ + G G + + + +P N
Sbjct: 449 SSSSAQQRPNNSSPPRRARNDDVHGTNNNNSYVNSGSGGGSAVGFSYGIGSSNVPVMNSS 508
Query: 344 SGGDGCLLLERTTLSGIP 397
+ G L L G+P
Sbjct: 509 TNGGVSLTLGLHHQIGLP 526
>At5g43030.1 68418.m05250 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 564
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 513 MRMLNQHPYTILEQLKKQHRVISVCIPVSLNPLYIRVLKSIVLTETCSGLEDAK 674
+R++N+ IL + KQ +P+ N YI L VL ETC+ L K
Sbjct: 258 LRLVNEDD--ILHDISKQ--CYGCVLPIFFNSCYICTLCDFVLHETCANLSKKK 307
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +2
Query: 290 AKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLIQDDNDQGWRPDAYSSEHSMSQD 469
+KR T + + + +TNV +GG+ +S P + ++QG +A S + +
Sbjct: 6 SKRVTRSSGSGLKQTNVDNGGE---------IS--PTVDRVSEQGKSSEAGSHMPTDANG 54
Query: 470 QGKIQHQVDEEALSNEDVEPAP 535
G + H++ + NE+ +P P
Sbjct: 55 NGHLHHEIMDHGKGNEEQKPTP 76
>At1g32570.1 68414.m04019 hypothetical protein
Length = 55
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 242 KTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCL 364
KT + LSS +V + + K IP+ V SGG C+
Sbjct: 4 KTLDGLSSITVNEEAAVEEAVVDMKRHIPEAAVRSGGSDCM 44
>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
protein / ELM2 domain-containing protein / Myb-like
DNA-binding domain-containing protein similar to
BRG1-binding protein ELD/OSA1 [Homo sapiens]
GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
DNA binding domain, PF01448: ELM2 domain, PF00249:
Myb-like DNA-binding domain
Length = 573
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 218 RPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIP 397
+ RST RK T ++S+ G R NK +IP+ + G ++ T SG+
Sbjct: 335 KSRSTKCRKLT-IIASERAGLTAGTSRARKRNKAEIPRRCIKVGHQHQAQVDEWTESGV- 392
Query: 398 LIQDDNDQGW-RPDAYSSEHSMSQDQ 472
D+D W + E+S + DQ
Sbjct: 393 ----DSDSKWLGTRIWPPENSEALDQ 414
>At5g25370.1 68418.m03009 phospholipase D, putative (PLDZETA)
identical to phospholipase D zeta SP:P58766 from
[Arabidopsis thaliana]; similar to phospholipase D
[Lycopersicon esculentum] GI:12060550; contains Pfam
profile PF00614: Phospholipase D. Active site motif
Length = 820
Score = 27.9 bits (59), Expect = 9.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 368 LERTTLSGIPLIQDDNDQGWRPDAYSS 448
L T+ +P++Q DN++GW + S
Sbjct: 449 LAEITVPPLPIVQPDNEEGWTVQVFRS 475
>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
mitogen-activated protein kinase kinase kinase
(MAPKKK)-related contains weak similarity to
Swiss-Prot:P53349 mitogen-activated protein kinase
kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
SWIM zinc finger
Length = 273
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 254 ALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDGCLLLERTTLSGIPLI 403
A+ + G+GG +++TA+ K ++ K VH D C+L R + P I
Sbjct: 174 AIENVDGGNGGGKEKETAVVKCRVCKNKVH---DECMLAWRKSRGRRPAI 220
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 215 LRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSG 349
LRPR + + T A S S S GSA K A+ +Q + + HSG
Sbjct: 44 LRPRGSSSAAATPAASGSSSSSSGSASGKPAVT-SQFARRS-HSG 86
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 188 PREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIP 328
P +E+P RA P + T + Q G+ GS N N +P
Sbjct: 1990 PFQEMPIRARWPYMPFSGPPTMQMQKQQEGTDGSNLPSPQFNNNMLP 2036
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 269 SVGSGGSAKRKTALNKNQIPKTNVHSG---GDGCLLLERTTLSGIPLIQDDNDQGWRPD 436
SVG G + RK+++ KNQ TNVH G+G + P + +DND G+ D
Sbjct: 241 SVGRSGGSARKSSVGKNQ--GTNVHLSPICGNG-PNDQNCDQGSQPPVFEDNDHGFDMD 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,398
Number of Sequences: 28952
Number of extensions: 329995
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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