Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B10
(542 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 30 1.1
At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS cla... 30 1.1
At5g53690.1 68418.m06670 hypothetical protein 29 1.5
At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR... 29 1.5
At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related ... 29 2.7
At3g52900.1 68416.m05830 expressed protein contains Pfam profile... 29 2.7
At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related ... 29 2.7
At5g17700.1 68418.m02074 MATE efflux family protein similar to r... 27 8.1
At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 27 8.1
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 215 ERGKVKCAHLFGDYHECST-LTKQLKRF--LAIRHERQRQISQGKLTGDEKYVSPRVDS 382
E + A L H C ++LKRF A+RHER++Q K+ EK S +V++
Sbjct: 371 EERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEVINKMKESEKEKSMQVET 429
>At1g72850.1 68414.m08426 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 422
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = -2
Query: 223 SSFQTISF*TIHVSGFLFLAATQKLVGNHATSNIRKR*AKERRQ 92
+SF+++S +H+SGFL L T K++G+ +R KE +Q
Sbjct: 342 TSFESLSLRAVHISGFLPL--TLKILGSSLRGKDEERWEKELQQ 383
>At5g53690.1 68418.m06670 hypothetical protein
Length = 76
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 143 SHQLLGRCQKEEARYMDCLEAYGLERGKVKCAHLFGDYHEC 265
+H L+ C +EE R + + + L GKV C Y EC
Sbjct: 29 THDLISHCVQEEERLTNEKKEHDLVAGKVICDKKRKQYDEC 69
>At5g40060.1 68418.m04860 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. False intron
created at intron 2 to escape a frameshift in the BAC
sequence.
Length = 1165
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 391 NLVTVHTGAHILFVACKFSLRNLSLPL 311
+LV H +H+L C+F+L N S PL
Sbjct: 1049 SLVAFHKASHLLIFDCRFALNNDSNPL 1075
>At3g62790.1 68416.m07054 NADH-ubiquinone oxidoreductase-related
contains weak similarity to NADH-ubiquinone
oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
sapiens]
Length = 83
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 185 YMDCLEAYGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQISQGKLTGDE 355
+MD E R C L DY EC +K+ +R I E QR++ G+E
Sbjct: 18 WMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKGEE 74
>At3g52900.1 68416.m05830 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 164
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 164 CQKEEARYMDCLEAYGLERGKVKCAHLFGDYHECSTLTKQLK 289
CQK+E Y D LEA+ E+ K K AHL E +++L+
Sbjct: 110 CQKKEKEYKDTLEAFN-EKNKEK-AHLVSMLMELLAESERLR 149
>At2g47690.1 68415.m05956 NADH-ubiquinone oxidoreductase-related
contains weak similarity to NADH-ubiquinone
oxidoreductase 15 kDa subunit (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-15 kDa) (CI-15 kDa) (Swiss-Prot:O43920) [Homo
sapiens
Length = 118
Score = 28.7 bits (61), Expect = 2.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 185 YMDCLEAYGLERGKVKCAHLFGDYHECSTLTKQLKRFLAIRHERQRQISQGKLTGDE 355
+MD E R C L DY EC +K+ +R I E QR++ G+E
Sbjct: 53 WMDFSECMSHCREPKDCTLLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKGEE 109
>At5g17700.1 68418.m02074 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 497
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 198 RQSMYLASSFWQRPRSWWEIMPPVT 124
R+S+YL W R W I P T
Sbjct: 22 RESLYLRKKIWSEVRKMWRIALPST 46
>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 924
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 141 IMPPVTSVNGERKNGDKDMMFSELNP 64
I P S N + K D D+ F+EL P
Sbjct: 802 IFPSTPSPNAKSKEDDSDLAFAELGP 827
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,870,915
Number of Sequences: 28952
Number of extensions: 199448
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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