Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B02
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s...   141   3e-34
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s...   141   5e-34
At5g62910.1 68418.m07894 expressed protein predicted proteins, A...    28   6.7  
At5g54370.1 68418.m06770 late embryogenesis abundant protein-rel...    28   6.7  
At3g48070.1 68416.m05241 expressed protein                             28   6.7  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    28   6.7  
At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur sub...    27   8.9  
At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur sub...    27   8.9  

>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
           iron-sulfur subunit, mitochondrial, putative / Rieske
           iron-sulfur protein, putative similar to
           ubiquinol--cytochrome-c reductase from Solanum tuberosum
           [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
           non-consensus AT acceptor splice site at exon 2
          Length = 272

 Score =  141 bits (342), Expect = 3e-34
 Identities = 75/176 (42%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
 Frame = +3

Query: 171 QGLKVKAGTRVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIX 341
           QG ++  G+ VPA V    T    I Y D + + R    DP+ +A         F Y + 
Sbjct: 67  QGNEIGFGSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVL 116

Query: 342 XXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRH 521
                             + SMSA+ DVLALA +E+ L  I  G +VT KWRGKP+FIR 
Sbjct: 117 SGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRR 176

Query: 522 RTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGY 689
           RT D+I    +V V +LRDPQ D  R +NP+WLVV+GVCTHLGC+P+ NAG++GG+
Sbjct: 177 RTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDYGGW 232


>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
           iron-sulfur subunit, mitochondrial, putative / Rieske
           iron-sulfur protein, putative similar to
           ubiquinol--cytochrome-c reductase from Solanum tuberosum
           [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
          Length = 274

 Score =  141 bits (341), Expect = 5e-34
 Identities = 74/176 (42%), Positives = 100/176 (56%), Gaps = 3/176 (1%)
 Frame = +3

Query: 171 QGLKVKAGTRVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIX 341
           QG ++  G+ VPA V    T    I Y D + + R    DP+ +A         F Y + 
Sbjct: 69  QGNEIGFGSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVL 118

Query: 342 XXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRH 521
                             + SMSA+ DVLALA +E+ L  I  G +VT KWRGKP+FIR 
Sbjct: 119 SGGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRR 178

Query: 522 RTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVXNAGEFGGY 689
           RT D+I    +V V +LRDPQ D  R +NP+WL+V+GVCTHLGC+P+ NAG++GG+
Sbjct: 179 RTEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGW 234


>At5g62910.1 68418.m07894 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 327

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 276 ESLCDGKPRNPGMKCQYERNVL 211
           +++CDG  R PG +  YERN++
Sbjct: 281 KTICDGDGRCPGCRKPYERNMV 302


>At5g54370.1 68418.m06770 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (GI:1350543)[Picea
           glauca]
          Length = 337

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 461 NSRRKVCHLQMERKTIVYPSQDSRRNLDREGCAC 562
           NS+ KVC+   +R T     +  + N +R G AC
Sbjct: 54  NSKNKVCYADCDRPTCKSQCRMRKPNCNRPGSAC 87


>At3g48070.1 68416.m05241 expressed protein
          Length = 319

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 276 ESLCDGKPRNPGMKCQYERNVL 211
           +++CDG  R PG +  YERN +
Sbjct: 273 KTICDGDGRCPGCRKPYERNTI 294


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  QPETSGGRTNTLRENGRPALA 127
           QP T GGR    R NGRP +A
Sbjct: 639 QPRTMGGRPLQYRPNGRPNMA 659


>At4g03280.2 68417.m00448 cytochrome B6-F complex iron-sulfur
           subunit, chloroplast / Rieske iron-sulfur protein /
           plastoquinol-plastocyanin reductase (petC) identical to
           gi:9843639; identical to cDNA rieske iron-sulfur protein
           precursor (petC) GI:5725449
          Length = 210

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +3

Query: 603 QNPKWLVVIG---VCTHLGCVPVXNAGE 677
           +N K L   G   VCTHLGCV   N  E
Sbjct: 124 ENDKTLATYGINAVCTHLGCVVPWNKAE 151


>At4g03280.1 68417.m00447 cytochrome B6-F complex iron-sulfur
           subunit, chloroplast / Rieske iron-sulfur protein /
           plastoquinol-plastocyanin reductase (petC) identical to
           gi:9843639; identical to cDNA rieske iron-sulfur protein
           precursor (petC) GI:5725449
          Length = 229

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
 Frame = +3

Query: 603 QNPKWLVVIG---VCTHLGCVPVXNAGE 677
           +N K L   G   VCTHLGCV   N  E
Sbjct: 143 ENDKTLATYGINAVCTHLGCVVPWNKAE 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,385,893
Number of Sequences: 28952
Number of extensions: 317124
Number of successful extensions: 956
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)