Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A11
         (366 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam pr...    38   0.003
At2g41420.1 68415.m05111 proline-rich family protein contains pr...    28   1.7  
At2g45280.1 68415.m05636 DNA repair family protein contains simi...    27   3.8  
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN...    27   3.8  
At3g46240.1 68416.m05005 protein kinase-related similar to light...    26   8.8  
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    26   8.8  

>At3g11220.1 68416.m01364 Paxneb protein-related contains Pfam
           profile PF05625: PAXNEB protein; similar to Paxneb
           protein (GI:10129788) [Mus musculus]; similar to PAX
           neighbour protein (GI:15887001) [Takifugu rubripes]
          Length = 355

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +1

Query: 67  SFRKFIDI--STHINGTKV-KNNLPYVSSGIPSLDHIVGGGIPAGSIFVV 207
           SF + I +  S  I G K   N   ++SSGI  LD I+GGG P GS+ +V
Sbjct: 11  SFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMV 60


>At2g41420.1 68415.m05111 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 98

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 191 PAGIPPPTIWSKDGIPEDTY 132
           P G+PPP  +  +G P+D Y
Sbjct: 8   PVGVPPPQGYPPEGYPKDAY 27


>At2g45280.1 68415.m05636 DNA repair family protein contains
           similarity to Swiss-Prot:O43502 DNA repair protein RAD51
           homolog 3 [Homo sapiens]
          Length = 363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 118 KNNLPYVSSGIPSLDHIVGGGIPAGSIFVVG 210
           + +LP +++    LD+I+GGGI    +  +G
Sbjct: 99  EESLPRITTSCSDLDNILGGGISCRDVTEIG 129


>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
           repair protein recA, chloroplast [Precursor] SP:Q39199
           from [Arabidopsis thaliana] ;contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 439

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 139 SSGIPSLDHIVGGGIPAGSI 198
           SSGI +LD  +GGG+P G +
Sbjct: 118 SSGILTLDLALGGGLPKGRV 137


>At3g46240.1 68416.m05005 protein kinase-related similar to light
           repressible receptor protein kinase (GI:1321686)
           [Arabidopsis thaliana]
          Length = 441

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 272 YLFIKFVLALRYYAILKEIHEPTTKMLPAGIPPPTIWSK 156
           Y+FI  +LA R    L+ +  PT+ +   G  P T++++
Sbjct: 380 YVFIAIILANRRKVRLQALAMPTSTVATMGTGPSTLFTQ 418


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 224 KEIHEPTTKMLPAGIPPPTIWSKDGIPEDTYGR 126
           ++ H+   ++  + IP  TIW    IPED + R
Sbjct: 420 RQAHQ-VAQLAHSRIPIHTIWLSHAIPEDAFAR 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,989,256
Number of Sequences: 28952
Number of extensions: 117123
Number of successful extensions: 321
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)