SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A03
         (426 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49210.1 68416.m05378 expressed protein                             29   1.00 
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein...    29   1.00 
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ...    29   1.3  
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    29   1.7  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    29   1.7  
At1g15980.1 68414.m01917 expressed protein                             29   1.7  
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ...    27   4.0  
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    27   5.3  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    27   5.3  
At1g34200.1 68414.m04243 oxidoreductase family protein similar t...    27   5.3  
At2g44600.1 68415.m05552 expressed protein                             27   7.0  
At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase (X...    26   9.3  
At3g23740.1 68416.m02985 expressed protein                             26   9.3  
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin...    26   9.3  
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr...    26   9.3  

>At3g49210.1 68416.m05378 expressed protein
          Length = 518

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 256 WFRVGLLVPRYIRITXSQTQSIEHSSTTSYPHTYI 152
           W R  ++V  ++ ++  QTQ+IE+ +  ++  TY+
Sbjct: 92  WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126


>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 535

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 212 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 310
           R  +V +N    PE  EAYR K+     P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534


>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 822

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 296 ENRTCTACSCKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
           EN+ C AC+  P     + SC +         A +R ++HH   PH+ T
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHLLT 599


>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 337 ILNCFSNIDQLYYENFXCIKL 399
           +LNC + + + YYEN  C+ +
Sbjct: 19  VLNCLARVPRRYYENISCVSV 39


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 296 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
           EN+ C AC    P+  G + SC K +       A +  ++HH + PH+ T
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHMLT 469


>At1g15980.1 68414.m01917 expressed protein
          Length = 461

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 191 YTLRLAXRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAP 334
           +  RL  R+ DVS N  KK NP  +P+++  +   ++ S   D  ++E P P
Sbjct: 32  FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP 83


>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1016

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 296 ENRTCTACSCKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
           E++ C AC   P     + SC++ +       A +  ++HH + PH+ T
Sbjct: 762 EDKLCQAC-VMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLT 809


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 346 SLVFGGRRFLLRVVSDGRIELVLLV---PVSLPWFRVG 242
           S  FG  RF L  ++  R  + LLV   P+S+ WF VG
Sbjct: 123 SQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVG 160


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = -3

Query: 313 RVVSDGRI---ELVLLVPVSLPWFRVGLLVPRYIRITXSQTQSIEHSSTT--SYPHTYIQ 149
           +V+ DGR    E  +LVP  L   ++G +VP   R+       I+ S+ T  S P T  Q
Sbjct: 136 KVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPATKHQ 195

Query: 148 RDQ 140
            D+
Sbjct: 196 GDE 198


>At1g34200.1 68414.m04243 oxidoreductase family protein similar to
           AX110P [Daucus carota] GI:285739; contains Pfam profiles
           PF01408: Oxidoreductase family NAD-binding Rossmann
           fold, PF02894: Oxidoreductase family C-terminal
           alpha/beta domain
          Length = 352

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 264 LTGTSSTSSILPSETTLRRNLLPPNTKLFF*Y*SVV 371
           ++  ++TSSI  +++  + N  PPNTKL   Y S++
Sbjct: 33  ISAIATTSSIEEAKSFAKSNNFPPNTKLHSSYESLL 68


>At2g44600.1 68415.m05552 expressed protein
          Length = 313

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 269 CKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHTEGS 141
           C  P+V+   +CS   +    PD  Y  +L     PH+ T  S
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294


>At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase
           (XSP1) identical to subtilisin-type serine endopeptidase
           XSP1 GI:6708179 from [Arabidopsis thaliana]
          Length = 749

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 225 TSGLRXARRRV*NTAPPHPIPTHTYRGIKAL 133
           TS L   RRRV N  PP  + T T R  K +
Sbjct: 659 TSTLAVFRRRVTNVGPPSSVYTATVRAPKGV 689


>At3g23740.1 68416.m02985 expressed protein 
          Length = 542

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 227 IHQDYAXPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 108
           ++ + + PD E  TQ+ H++    +  GS+   SS L GS
Sbjct: 297 VNLEQSDPDKEQETQIKHVIPDTENNLGSEIPLSSPLVGS 336


>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
           protein contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 208

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 200 RLAXRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAP 334
           RL    P V+  K   P P++ Y N  +     + +Y  +++P P
Sbjct: 160 RLKYEEPKVTPRKPPAPYPFDYYENLGFPPSDSLFNYFSDDNPQP 204


>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 383

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 337 ILNCFSNIDQLYYENFXCI 393
           +LNC + + + YY N  C+
Sbjct: 34  VLNCLARVSRRYYPNLSCV 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,811,405
Number of Sequences: 28952
Number of extensions: 178189
Number of successful extensions: 452
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -