Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    50   6e-07
At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)...    30   0.93 
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   2.8  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    27   5.0  
At5g08050.1 68418.m00938 expressed protein predicted protein, Ar...    27   8.7  
At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinosit...    27   8.7  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +1

Query: 133 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
           L NAG++V  V  +T  PEML GRVKTLHP +H GI
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGI 143



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 3/154 (1%)
 Frame = +3

Query: 24  KLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERWPHSSRC--VGHHESTGDAR 197
           K AL+S+SDK  L SL   L E G  ++++ GTA+         ++   + H     D R
Sbjct: 72  KQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPEMLDGR 131

Query: 198 RSGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMISVVVXXLYPF-XXXXXXXXXXXXXXX 374
               +    G       + +   E +         VVV  LYPF                
Sbjct: 132 VKTLHPNIHGGILARRDV-EHHMEALNEHGIGTFDVVVVNLYPFYEKVTAPGGISFEDGI 190

Query: 375 XNIDIGXVTLLRAQPRTTXGSPFVCXPADYDAVV 476
            NIDIG   ++RA  +       V    DY AV+
Sbjct: 191 ENIDIGGPAMIRAAAKNHKDVLIVVDSGDYQAVL 224


>At1g09620.1 68414.m01079 tRNA synthetase class I (I, L, M and V)
           family protein similar to cytosolic leucyl-tRNA
           synthetase [Candida albicans] GI:9858190; contains Pfam
           profile PF00133: tRNA synthetases class I (I, L, M and
           V)
          Length = 1084

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
 Frame = +3

Query: 75  KSLSECGLQLIASXGTATXASERWPHSSRCVGH--------HESTGD---ARRSGENFTS 221
           K L +  L       TA  A+  WP   RC GH         +STG+    R+S E F++
Sbjct: 676 KDLIQNHLTFFIYNHTALMANRNWPRGIRCNGHIMLNSEKMSKSTGNFRTLRQSIEEFSA 735

Query: 222 SGTCWDLSSIXD 257
           +GT + L+   D
Sbjct: 736 TGTRFCLADAGD 747


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 26  TSSSQRFRQDGSTLVSKEPVGMWPAVDCQXRYRHGRFGTLASQF 157
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
           topoisomerase II / DNA gyrase (TOP2) identical to
           SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
           {Arabidopsis thaliana}
          Length = 1473

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 213 SFHPTSEHLRCSRDVRHILNCEASVPKRPWRYRXWQST 100
           +F P         +VR +LN E+ VP  PW YR ++ T
Sbjct: 851 TFIPNYNPREIVANVRRLLNGESMVPMDPW-YRGFKGT 887


>At5g08050.1 68418.m00938 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 158

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 24  KLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASE 140
           +L LL+ ++K GLLSLA+  S   L  I   G  T A E
Sbjct: 48  QLKLLTKAEKAGLLSLAEK-SGFSLSTIERLGLLTKAEE 85


>At3g58130.1 68416.m06482 N-acetylglucosaminyl-phosphatidylinositol
           de-N-acetylase-related similar to SP|Q9Y2B2
           N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
           (EC 3.5.1.-) (Phosphatidylinositol-glycan biosynthesis,
           class L protein) (PIG-L) {Homo sapiens}
          Length = 257

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 218 CKVFTRPPSISGALVMSD 165
           CK+F R  SISGA ++ D
Sbjct: 19  CKIFFRATSISGAAILDD 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,512,348
Number of Sequences: 28952
Number of extensions: 139335
Number of successful extensions: 396
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)