Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0022
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   107   1e-23
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    33   0.25 
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    33   0.25 
At5g13340.1 68418.m01535 expressed protein                             30   1.8  
At5g24680.1 68418.m02917 expressed protein similar to unknown pr...    29   2.3  
At3g09710.1 68416.m01150 calmodulin-binding family protein low s...    29   2.3  
At2g39980.1 68415.m04913 transferase family protein contains Pfa...    28   7.1  
At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolas...    28   7.1  
At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolas...    27   9.3  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    27   9.3  
At4g24790.1 68417.m03550 expressed protein ; expression supporte...    27   9.3  
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    27   9.3  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    27   9.3  
At3g19070.1 68416.m02422 cell wall protein-related similar to ve...    27   9.3  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/87 (55%), Positives = 64/87 (73%)
 Frame = +2

Query: 245 PENLKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVTGQEGVNIICFQELWNMPFAFC 424
           P  ++VG++Q+SIA+PT  P ++Q + IF+K+K IID  G  GVNI+C QE W MPFAFC
Sbjct: 87  PRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIIDAAGVAGVNILCLQEAWTMPFAFC 146

Query: 425 TREKQPWCEFXESAEDGPTTTLLRELA 505
           TRE++ WCEF E   DG +T  L+ELA
Sbjct: 147 TRERR-WCEFAEPV-DGESTKFLQELA 171



 Score = 85.0 bits (201), Expect = 4e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +1

Query: 508 QYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIXRVGXFNES 663
           +Y MVIVS ILERD  H ++LWNTAV+I + GN+IGKHRKNHI RVG FNES
Sbjct: 173 KYNMVIVSPILERDIDHGEVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNES 224


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 305 VNEQKKAIFNKVKKIIDVTGQEGVNIICFQELWNMPFAFCTREKQP-WCEFXESAED-GP 478
           V   KK   +  KK I+    +G  ++   E+WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 479 TTTLLRELA 505
           +T +L E++
Sbjct: 154 STAMLSEVS 162



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 550 EKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           E+  D L+NT  V    G +  KHRK H+
Sbjct: 176 ERVGDRLYNTCCVFGSDGELKAKHRKIHL 204


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 305 VNEQKKAIFNKVKKIIDVTGQEGVNIICFQELWNMPFAFCTREKQP-WCEFXESAED-GP 478
           V   KK   +  KK I+    +G  ++   E+WN P+   + +  P + E  ++  D  P
Sbjct: 97  VTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPY---SNDSFPVYAEEIDAGGDASP 153

Query: 479 TTTLLRELA 505
           +T +L E++
Sbjct: 154 STAMLSEVS 162



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 550 EKHSDILWNTAVVISDTGNVIGKHRKNHI 636
           E+  D L+NT  V    G +  KHRK H+
Sbjct: 176 ERVGDRLYNTCCVFGSDGELKAKHRKIHL 204


>At5g13340.1 68418.m01535 expressed protein
          Length = 242

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 172 SLQLRRLTSTSPHTLSRPRTSRPDPREFEGRNSSAFHRGAHRSSSQRAKE 321
           S + RR  S SP+T    ++  P PR+ +   SS+     HR + +  KE
Sbjct: 27  SRRTRRDRSRSPYTSRHKKSRSPAPRQHQRDRSSSLSPSEHRIAIEVKKE 76


>At5g24680.1 68418.m02917 expressed protein similar to unknown
           protein (pir||T38384)
          Length = 399

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 525 DHHCVLMASSXXXXXVGPSSADSXNSHHGCFSLVQ-NAKGMFHN 397
           DHH  L  +S       PSS+ S +S +   SLVQ   K  F++
Sbjct: 37  DHHLALQLASDDHSSDDPSSSSSASSSNNVASLVQLQTKSQFYS 80


>At3g09710.1 68416.m01150 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 454

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 106 KSSTEFILGGGITLKSN*KNPRSLQLRRLTSTSPHTLSR-PRTSRPDPREFEGRNSSAFH 282
           K+ST     GG T KS+ +N  +   +  T ++  T +R PR  RP P   + ++S    
Sbjct: 290 KNSTNRNSQGGETAKSSNRNKLNSSTKPNTPSASSTATRNPRKKRPIPSSIKSKSSDDEA 349

Query: 283 RGAHRS 300
           + + R+
Sbjct: 350 KSSERN 355


>At2g39980.1 68415.m04913 transferase family protein contains Pfam
           profile PF02458 transferase family
          Length = 482

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 598 CH*LQPQCSKVCPNASRPFLISRTRSPL 515
           CH +Q  C   CPN   P LIS  +  L
Sbjct: 39  CHYIQKGCLFTCPNLPLPALISHLKHSL 66


>At2g30650.1 68415.m03738 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 422

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 646 RLSXCGSCDVSRSRFRCH*LQPQCSKVCPNASRPFLISRTRSP 518
           RL   G C +   R  CH ++   SK      R  LI + R+P
Sbjct: 332 RLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNP 374


>At5g65940.1 68418.m08301 3-hydroxyisobutyryl-coenzyme A hydrolase /
           CoA-thioester hydrolase (CHY1) identical to gi:8572760;
           contains Pfam profile PF00388 enoyl-CoA
           hydratase/isomerase family protein
          Length = 378

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 646 RLSXCGSCDVSRSRFRCH*LQPQCSKVCPNASRPFLISRTRSP 518
           RL   G C +   R  CH ++ + SK      R  L+ + ++P
Sbjct: 292 RLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILVDKDKNP 334


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = -1

Query: 481 GRPVFS*FGKLAPRLLLPCAEREGHVPQLLETDDVNTLLAGXIDDFLDFIENCFLLLVDW 302
           G  V+  +G L+    L C  + G + +LL+  +++++LAG +      +    L + + 
Sbjct: 454 GANVYVSYGCLSAIHKLTCLSKSGDIVELLKNTNMSSVLAGILSRKDHHVIVVALQVAEV 513

Query: 301 TIGGHRDGMLN 269
            +  +RD  LN
Sbjct: 514 LLEKYRDTFLN 524


>At4g24790.1 68417.m03550 expressed protein ; expression supported
           by MPSS
          Length = 815

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = -1

Query: 445 PRLLLPCAEREGHVPQLLETDDVNTLLAGXIDDFLDFIENCFLLLVDWTIGGHRDGMLNY 266
           PR +L  +++  H  ++ + D    L    I++ +DF +     +   + G  RD  +  
Sbjct: 399 PRNVLSRSQKY-HFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIML 457

Query: 265 SYLQILGGRVCSSL 224
             L +LG R+ +SL
Sbjct: 458 DQLSLLGKRITTSL 471


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 498 NSPSVRNGDRVLDIRKGREAFGHTLEHCGC 587
           NS  V+ G +  D+ + R     T+EHC C
Sbjct: 241 NSGLVQEGWKYFDLMRSRYGIIPTIEHCSC 270


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 148 KSN*KNPRSLQLRRLTSTSPHTLSRPRTSRP-DPREFEGRNSSAFHRGAHRSSSQRAKES 324
           +S  K+P S + RR + T      RPR+ R   P  ++ R++    R ++R S   ++  
Sbjct: 518 RSKSKSPISYRRRRRSPTYSPPFRRPRSHRSRSPLRYQRRSTYEGRRRSYRDSRDISESR 577

Query: 325 NFQ*SQEN 348
            +  S E+
Sbjct: 578 RYGRSDEH 585


>At3g19070.1 68416.m02422 cell wall protein-related similar to
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii] gi|12018147|gb|AAG45420;
          Length = 346

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 196 STSPHTLSRPRTS-RPDPREFEGRNSSAFHRGAHRSSSQRAKESN 327
           S+ P+++  P +S RP  REF   + S+  +    SSS+RA+ SN
Sbjct: 173 SSMPYSVRPPDSSDRPSLREFFPSSPSSSIQPPESSSSKRARLSN 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,956,987
Number of Sequences: 28952
Number of extensions: 302913
Number of successful extensions: 890
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)