Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0003
(854 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit... 29 3.0
At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein ... 29 3.9
At1g74450.1 68414.m08625 expressed protein 29 5.2
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit... 28 6.9
At5g11390.1 68418.m01329 expressed protein 28 6.9
At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putat... 28 6.9
At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putat... 28 6.9
At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putat... 28 6.9
At1g05710.4 68414.m00595 ethylene-responsive protein, putative s... 28 6.9
At1g05710.3 68414.m00594 ethylene-responsive protein, putative s... 28 6.9
At1g05710.2 68414.m00593 ethylene-responsive protein, putative s... 28 6.9
At1g05710.1 68414.m00592 ethylene-responsive protein, putative s... 28 6.9
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit... 28 9.1
At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein ... 28 9.1
>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 441 EPQVRQLYETLAALLKEYLDGLMTSWAHFAALITD 545
EPQ+ L +T A+ K+Y D W H LI D
Sbjct: 117 EPQIEHLLQTAEAIRKDYPD---EDWLHLTGLIHD 148
>At2g28450.1 68415.m03456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 809
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 465 ETLAALLKEYLDGLMTSWAHFAALITDFFEKHKPELQEFTNVIHRYIQRSNPXN 626
+ +++LLK+YLD A + D K P +E TN H Q P N
Sbjct: 616 DVMSSLLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEHVADQNLPPSN 669
>At1g74450.1 68414.m08625 expressed protein
Length = 397
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/80 (23%), Positives = 35/80 (43%)
Frame = +3
Query: 285 LKELSHAFNXIVQFFAKIFDTIYKGTEPIVEXXINTYVETVKKIAEXYXXQLEPQVRQLY 464
LKE+ H F + ++ D++ E + VE + K+ E L+P R++
Sbjct: 315 LKEI-HQFEKTSRLMNELVDSVQFPLSEEKEMEVRERVEELGKLQEALKNGLDPFERKVR 373
Query: 465 ETLAALLKEYLDGLMTSWAH 524
E +++ +GL T H
Sbjct: 374 EVFHRIVRSRTEGLDTVGKH 393
>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 314
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 399 ETVKKIAEXYXXQL-EPQVRQLYETLAALLKEYLDGLMTSWAHFAALITD 545
E K++ + L EPQ++ L ++ A+ K+Y + W H ALI D
Sbjct: 105 ELSKEVVDESDPDLDEPQIQHLLQSAEAIRKDYPN---EDWLHLTALIHD 151
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +1
Query: 67 SDYGLSKENFNYFLNALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFKKIDEDFRRE 246
++YG+ E+ + AL DL+ + E +K+K K K ++ ++ + E
Sbjct: 395 NEYGIQTEDADATSGALITDLERINEELKDKLAKTEARAEETESK-CKILEESKKELQDE 453
Query: 247 WSNFTRKSLMI 279
NF K I
Sbjct: 454 LGNFRDKGFTI 464
>At1g55810.3 68414.m06396 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 237
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g55810.2 68414.m06395 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 237
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g55810.1 68414.m06394 uracil phosphoribosyltransferase, putative
/ UMP pyrophosphorylase, putative / UPRTase, putative
similar to SP|O65583 Uracil phosphoribosyltransferase
(EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
{Arabidopsis thaliana}; contains Pfam profile PF00485:
Phosphoribulokinase / Uridine kinase family
Length = 466
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 91 NFNYFLNALKNDLDT-LAERIKEKSEKAGQEISTISQKTAPYFKKIDEDF 237
N F++A D D LA RIK + + G++I+T+ + + + K EDF
Sbjct: 166 NMKIFVDA---DADVRLARRIKRDTVEKGRDIATVLDQYSKFVKPAFEDF 212
>At1g05710.4 68414.m00595 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 109 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 219
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.3 68414.m00594 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 109 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 219
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.2 68414.m00593 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 171
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 109 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 219
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At1g05710.1 68414.m00592 ethylene-responsive protein, putative
similar to ethylene-inducible ER33 protein [Lycopersicon
esculentum] gi|5669656|gb|AAD46413; identical to bHLH
transcription factor (bHLH-alpha gene)
Length = 149
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 109 NALKNDLDTLAERIKEKSEKAGQEISTISQKTAPYFK 219
+++K L+ KE+ +K G+ IS + Q +PY K
Sbjct: 23 SSIKRHKSDLSFSSKERKDKVGERISALQQIVSPYGK 59
>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 317
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 441 EPQVRQLYETLAALLKEYLDGLMTSWAHFAALITD 545
EPQ++ L ++ A+ K+Y + W H ALI D
Sbjct: 123 EPQIQHLLQSAEAIRKDYPN---EDWLHLTALIHD 154
>At3g56920.1 68416.m06331 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 338
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -2
Query: 376 STIGSVPL*MVSNILAKNWTXSLKACDSSFRVLSSVTSW*NCSILCGSLHRFS*SKELFF 197
S +GSV L +++ +T +K CD+ ++ ++ +CSI + RF +
Sbjct: 119 SKLGSVKLPRTKDVMVNGFTVKVKFCDTC-QLYRPPRAF-HCSICNNCVQRFD-HHCPWV 175
Query: 196 GISLKFPGRPFHF-FL*CAQLMCL 128
G + PF FL C+ L+C+
Sbjct: 176 GQCIALRNYPFFVCFLSCSTLLCI 199
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,723
Number of Sequences: 28952
Number of extensions: 300145
Number of successful extensions: 940
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -