Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0001
(818 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 183 1e-46
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 182 2e-46
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 182 2e-46
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 181 6e-46
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 180 8e-46
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 180 8e-46
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 180 8e-46
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 180 1e-45
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 180 1e-45
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 163 1e-40
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 158 5e-39
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 157 1e-38
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 110 9e-25
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 95 4e-20
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 82 4e-16
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 68 7e-12
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 62 3e-10
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 57 1e-08
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 49 4e-06
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida... 34 0.13
At3g07870.1 68416.m00962 F-box family protein contains F-box dom... 26 2.6
At3g50060.1 68416.m05473 myb family transcription factor contain... 29 2.8
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 29 2.8
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 29 3.7
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 29 3.7
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ... 29 3.7
At1g16690.2 68414.m01999 transcription factor-related similar to... 29 4.9
At1g16690.1 68414.m01998 transcription factor-related similar to... 29 4.9
At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (... 28 6.5
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 183 bits (445), Expect = 1e-46
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 87.0 bits (206), Expect = 1e-17
Identities = 45/74 (60%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER YSFTT+
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDYLMKILTERGYSFTTSAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ D+ E L Y+
Sbjct: 208 REIVRDVKEKLAYI 221
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 182 bits (444), Expect = 2e-46
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 87.8 bits (208), Expect = 8e-18
Identities = 46/74 (62%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER YSFTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDHLMKILTERGYSFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ D+ E L Y+
Sbjct: 208 REIVRDMKEKLSYI 221
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 182 bits (444), Expect = 2e-46
Identities = 83/85 (97%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFNTPAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNTPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 87.8 bits (208), Expect = 8e-18
Identities = 46/74 (62%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER YSFTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDHLMKILTERGYSFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ D+ E L Y+
Sbjct: 208 REIVRDMKEKLSYI 221
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 181 bits (440), Expect = 6e-46
Identities = 82/85 (96%), Positives = 84/85 (98%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNVPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 87.4 bits (207), Expect = 1e-17
Identities = 47/74 (63%), Positives = 48/74 (64%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER Y FTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDSLMKILTERGYMFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L YV
Sbjct: 208 REIVRDIKEKLAYV 221
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 180 bits (439), Expect = 8e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 106 bits (254), Expect = 2e-23
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 83.0 bits (196), Expect = 2e-16
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY G++LPHAILRLDL L ER Y FTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLA-GRDLTDYLMKILTERGYMFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L +V
Sbjct: 208 REIVRDIKEKLSFV 221
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 180 bits (439), Expect = 8e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 106 bits (254), Expect = 2e-23
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 83.0 bits (196), Expect = 2e-16
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY G++LPHAILRLDL L ER Y FTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLA-GRDLTDYLMKILTERGYMFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L +V
Sbjct: 208 REIVRDIKEKLSFV 221
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 180 bits (439), Expect = 8e-46
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHG+V+NWDDMEKIWHHTFYNELR+APEEHPVLLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN+PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNSPAMYVAIQAVLSLYAS 147
Score = 106 bits (254), Expect = 2e-23
Identities = 46/59 (77%), Positives = 53/59 (89%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+++ +V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH GVMVGM QKD+YVGDEAQSK
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSK 63
Score = 83.0 bits (196), Expect = 2e-16
Identities = 44/74 (59%), Positives = 48/74 (64%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY G++LPHAILRLDL L ER Y FTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLA-GRDLTDYLMKILTERGYMFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L +V
Sbjct: 208 REIVRDIKEKLSFV 221
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 180 bits (438), Expect = 1e-45
Identities = 81/85 (95%), Positives = 83/85 (97%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 89.0 bits (211), Expect = 3e-18
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER YSFTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDALMKILTERGYSFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L Y+
Sbjct: 208 REIVRDIKEKLCYI 221
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 180 bits (438), Expect = 1e-45
Identities = 81/85 (95%), Positives = 83/85 (97%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKMT
Sbjct: 63 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMT 122
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFETFN PAMYVAIQAVLSLYAS
Sbjct: 123 QIMFETFNAPAMYVAIQAVLSLYAS 147
Score = 110 bits (265), Expect = 9e-25
Identities = 50/59 (84%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
E++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSK
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK 63
Score = 89.0 bits (211), Expect = 3e-18
Identities = 47/74 (63%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL L ER YSFTTT
Sbjct: 149 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA-GRDLTDALMKILTERGYSFTTTAE 207
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L Y+
Sbjct: 208 REIVRDIKEKLCYI 221
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 163 bits (397), Expect = 1e-40
Identities = 70/85 (82%), Positives = 80/85 (94%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 433
+RGIL+LKYPIEHG+V+NWDDMEKIWHHTFYNELR+ PEEHP+LLTEAPLNPK NREKMT
Sbjct: 64 RRGILSLKYPIEHGVVSNWDDMEKIWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMT 123
Query: 434 QIMFETFNTPAMYVAIQAVLSLYAS 508
QIMFE+F P+MY+ IQAVLSLY+S
Sbjct: 124 QIMFESFAFPSMYIGIQAVLSLYSS 148
Score = 102 bits (245), Expect = 2e-22
Identities = 44/59 (74%), Positives = 54/59 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 257
+E A+V DNG+GM KAGFAGDDAPRAVFPS+VGRPRH+GVMVGM +KD++VGDEAQ++
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHRGVMVGMDEKDTFVGDEAQAR 64
Score = 83.8 bits (198), Expect = 1e-16
Identities = 43/74 (58%), Positives = 49/74 (66%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTGIVLDSGDGVSHTVPIY GYALPHAILRLDL + ER Y++TT+
Sbjct: 150 RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEYLTKIMM-ERGYTYTTSAE 208
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L Y+
Sbjct: 209 REIVRDIKEKLCYI 222
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 158 bits (383), Expect = 5e-39
Identities = 75/103 (72%), Positives = 83/103 (80%)
Frame = +2
Query: 200 RDGRYGTEGLVRR*RGTEQRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 379
RDG E V G R ILTLK P+EHGIV NWDDMEKIWH+TFYNELRV PEEHP
Sbjct: 35 RDGLNPNESYVGE-EGHANRDILTLKDPMEHGIVNNWDDMEKIWHYTFYNELRVDPEEHP 93
Query: 380 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 508
VLLTEAP NPKANREKMTQIMFE+F+ PAMYV++Q+VL LY+S
Sbjct: 94 VLLTEAPYNPKANREKMTQIMFESFDVPAMYVSMQSVLYLYSS 136
Score = 77.4 bits (182), Expect = 1e-14
Identities = 39/74 (52%), Positives = 47/74 (63%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPS 690
RTTG+VLD G+ VSHTVP+Y GYALPH ILRLDLG + ER Y++TT+
Sbjct: 138 RTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLG-GRDLTDYLIEIMTERGYTYTTSAE 196
Query: 691 GKSFVDIXEXLXYV 732
+ DI E L YV
Sbjct: 197 REIVRDIKEKLCYV 210
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS 254
+V D G GM +AGFAGD+AP+ VFP +VGRPR G+ +SYVG+E +
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVVFPCVVGRPRD-----GLNPNESYVGEEGHA 51
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 157 bits (380), Expect = 1e-38
Identities = 68/83 (81%), Positives = 78/83 (93%)
Frame = +2
Query: 260 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 439
GILTL YP+EHG+V+NWDDMEKIW+HTFY+ELRVAPEEHPVLLTEAPLNPKA+REKMTQI
Sbjct: 20 GILTLDYPMEHGVVSNWDDMEKIWYHTFYSELRVAPEEHPVLLTEAPLNPKADREKMTQI 79
Query: 440 MFETFNTPAMYVAIQAVLSLYAS 508
MFETF P+MY+ +QA LSL+AS
Sbjct: 80 MFETFAVPSMYIGMQAALSLHAS 102
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/34 (85%), Positives = 30/34 (88%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDL 612
RTTG VLDSGDGVS+ VPIY G ALPHAILRLDL
Sbjct: 104 RTTGTVLDSGDGVSYIVPIYEGSALPHAILRLDL 137
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 110 bits (265), Expect = 9e-25
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +2
Query: 248 TEQRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 427
+E R L + YP+ +GIV NWDDME +W H FYNEL++ P + +LLT+ PLNP NREK
Sbjct: 60 SELRHQLDINYPVHNGIVQNWDDMEHVWDHAFYNELKINPSDCKILLTDPPLNPSKNREK 119
Query: 428 MTQIMFETFNTPAMYVAIQAVLSLYA 505
M + MFE +N +++ IQAVL+LYA
Sbjct: 120 MIETMFEKYNFAGVFIQIQAVLTLYA 145
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +1
Query: 517 TGIVLDSGDGVSHTVPIYXGYALPHAILRLDLGXXXXXXXXXXXXLNERXYSFTTTPSGK 696
TG+V+DSGDGV+H VP+ GY+ PH R+++ L+ R Y+ T +
Sbjct: 150 TGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVA-GRHITAYLVDLLSRRGYAMNKTADFE 208
Query: 697 SFVDIXEXLXYV 732
+ +I E L Y+
Sbjct: 209 TVREIKEKLCYI 220
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGD 242
+V DNG+G K GFAG++ P +VFP +VGRP R++ ++ KD VG+
Sbjct: 7 VVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLMEQQVKDIVVGE 57
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 95.5 bits (227), Expect = 4e-20
Identities = 41/78 (52%), Positives = 54/78 (69%)
Frame = +2
Query: 272 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 451
L YPIEHG V +WD ME+ W +N LR PE+H LLTE+PL P +RE +I+FET
Sbjct: 86 LHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTPPESREYTGEILFET 145
Query: 452 FNTPAMYVAIQAVLSLYA 505
FN P +Y+A+ +VL+L A
Sbjct: 146 FNVPGLYIAVNSVLALAA 163
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 93 ALVVDNGSGMCKAGFAGDDAPRAVFPSIV 179
A+V+DNG+G K GFAG+ P + P++V
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEPCFILPTVV 36
Score = 35.1 bits (77), Expect = 0.056
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 517 TGIVLDSGDGVSHTVPIYXGYALPHAI 597
TG+V+D GDG +H VP+ GY + I
Sbjct: 173 TGVVVDVGDGATHVVPVAEGYVIGSCI 199
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 82.2 bits (194), Expect = 4e-16
Identities = 34/76 (44%), Positives = 52/76 (68%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 460
PI+ GIV++WD ++ IW H F + L + P EHP+LL E PLN + REK ++MFE +
Sbjct: 94 PIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKV 153
Query: 461 PAMYVAIQAVLSLYAS 508
PA+++A VL+ +A+
Sbjct: 154 PALFMAKNPVLTSFAT 169
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/34 (67%), Positives = 31/34 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 182
+EV+A+VVD GS CKAG+AG+DAP+AVFPS++G
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIG 38
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 511 RTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLG 615
R T +V+D G G + P++ GY L A++ LG
Sbjct: 171 RATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLG 205
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFN 457
PIE G++ +WD ME + + Y L E +L T+ PKA RE++ Q+MFETFN
Sbjct: 57 PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFN 116
Query: 458 TPAMYVAIQAVLSLYA 505
Y + QAVLSLYA
Sbjct: 117 VSGFYASEQAVLSLYA 132
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 62.5 bits (145), Expect = 3e-10
Identities = 26/58 (44%), Positives = 37/58 (63%)
Frame = +2
Query: 254 QRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 427
+R + + P + GIVT+WD ++ +W H F N L + P EHP+LL E PLN + REK
Sbjct: 79 RRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/34 (70%), Positives = 31/34 (91%)
Frame = +3
Query: 81 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 182
+EV+A+VVD GS CKAG+AG+DAP+AVFPS+VG
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVG 38
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +2
Query: 272 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 451
++ PI+ G + N D +IW H F + L +AP +LLTEAPL+ + + +++FE
Sbjct: 61 VRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFED 120
Query: 452 FNTPAMYVA-IQAVLSLYASVVPPVS 526
F ++Y+A Q+++ LY + P S
Sbjct: 121 FGFSSLYIAHPQSLVHLYEASRQPDS 146
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 439 HVRNIQHARHVRRHPSRALAVRVRRTTGIVLDSGDGVSHTVPIYXGYALPHAILRLDLG 615
H +++ H R P L+ + +V+D G +H VP+ + L HAI R+DLG
Sbjct: 130 HPQSLVHLYEASRQPDSILS---KTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLG 185
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 188
+V+DNG G+ KAG G+ P V P+ + +P
Sbjct: 5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKP 35
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 PIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 457
P + +V ++ ME I + F + +HP+L+TE NP +R KM +++FET+
Sbjct: 85 PFDSNVVYQFEIMEYILDYAFDRLGANGSGIDHPILITECACNPVQSRSKMAELLFETYG 144
Query: 458 TPAMYVAIQAVLS 496
PA+ + A S
Sbjct: 145 VPAVAFGVDAAFS 157
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +3
Query: 96 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGD 242
+V+DNG+ + G+AG+ PR VF +IV RPRH+ G+ + VGD
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVVFRNIVQRPRHKAT----GETVTIVGD 66
>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], lac110 laccase, Populus
trichocarpa, EMBL:PTY13773
Length = 584
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -2
Query: 217 PIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSS 80
P P I P RGL +G T+ +SSPA+P + +P +ST + TS+
Sbjct: 290 PTPDIKP-TRGLIVYQGATS--SSSPAEPLMPVPNDMSTAHRFTSN 332
>At3g07870.1 68416.m00962 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 26.2 bits (55), Expect(2) = 2.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 193 WRGLPTIEGNTARGASSPAKPA--LHIPEPL 107
WR + T G + +SSP KP LH P+
Sbjct: 55 WRSVLTQHGRLSSSSSSPTKPCLLLHCDSPI 85
Score = 21.8 bits (44), Expect(2) = 2.6
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 382 DGVFLGGDTQLIVEGMMPNLLHVIPVS 302
DGV +GG + + E ++ ++ +P+S
Sbjct: 17 DGVGVGGGLESLPEDIIADIFSRLPIS 43
>At3g50060.1 68416.m05473 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain;
identical to cDNA MYB-related protein (1107 bp)
GI:1263096
Length = 301
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Frame = -1
Query: 629 EDRDRPKSRRRMAWGSAY-PS*MGTVWETPSP------ESSTIP 519
ED+DRPK RR +++ SA+ P G SP +SSTIP
Sbjct: 121 EDQDRPKKRRSVSFDSAFAPVDTGLYMSPESPNGIDVSDSSTIP 164
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces
cerevisiae]
Length = 1252
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 492 SRCTRPSYHRYRAGLRRRCL-PHRTHLRXIRTPPRHPASG 608
S T SY ++AG R R L P + L +R PPR PA+G
Sbjct: 594 STATSKSY-TFKAGDRVRFLGPSTSSLASLRAPPRGPATG 632
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = +2
Query: 338 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 487
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 488 VLSLYAS 508
VL+LYA+
Sbjct: 241 VLALYAA 247
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Frame = +2
Query: 338 TFYNELRVAPEEHPVLLTEAPL-------NPKANREKMTQIMFETF---NTPAMYVAIQA 487
T + ++V P P++++ PL + KA+R ++ +F N PA+ QA
Sbjct: 182 TIFTRMQVKPSMQPIVVS-LPLCHFDDTESAKASRRQLKTAIFNVLFDMNVPAVCAVNQA 240
Query: 488 VLSLYAS 508
VL+LYA+
Sbjct: 241 VLALYAA 247
>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
similar to SP|Q01205 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 681 NAEREIVRGYQXXAVXRWLSTFEQEXGQPV 770
+ R I+ GYQ A+ RW+ F + G V
Sbjct: 65 DCSRTIINGYQGTALQRWVRPFSSDSGDVV 94
>At1g16690.2 68414.m01999 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 266 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 427
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At1g16690.1 68414.m01998 transcription factor-related similar to
enhancer of polycomb (GI:11907923)[Homo sapiens]
Length = 439
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +2
Query: 266 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 427
L++KY + H I + W + +IW L+ P PV T P N REK
Sbjct: 178 LSIKYGVFHAIYSYWKNKREIWQKPILRRLQPPP---PVNDTN-PYNVFRPREK 227
>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
(IRX3) identical to gi:5230423
Length = 1026
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 394 GSPQPQGQQREDDPDHVR---NIQHARHVRRHPSRAL 495
GSP+ +G + E+D D + NI+H + +H + A+
Sbjct: 91 GSPRVEGDEDEEDIDDIEYEFNIEHEQDKHKHSAEAM 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,011
Number of Sequences: 28952
Number of extensions: 404630
Number of successful extensions: 1183
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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