Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0037
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    31   0.78 
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.4  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.4  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.1  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.1  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.1  
At5g42370.1 68418.m05159 expressed protein                             29   4.1  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   4.1  
At1g25320.1 68414.m03142 leucine-rich repeat transmembrane prote...    29   4.1  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   5.5  
At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate dehydro...    27   9.6  
At5g22390.1 68418.m02612 expressed protein                             27   9.6  
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1...    27   9.6  
At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro...    27   9.6  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   9.6  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 491 RKSSYVRTGSGPAFSGLPRIFLAVKSCRFRFVRDRHDSVRPPFNGQLRT 637
           R ++YV T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 176 RNNTYV-TQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 520 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 636
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 396 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 301
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 462 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 286
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 462 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 286
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 183 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 49
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 122 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 12
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 153 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 254
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g25320.1 68414.m03142 leucine-rich repeat transmembrane protein
           kinase, putative similar to putative receptor-like
           protein kinase GI:4262228 from [Arabidopsis thaliana]
          Length = 702

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 617 FNGQLRTGTDKGNPTV*LKQSIAMGPRGCLT 709
           FNG+L    D+G   + LKQSI+  P G L+
Sbjct: 16  FNGELNALNDEGFALLTLKQSISKDPDGSLS 46


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 178 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 80
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g62530.1 68418.m07848 delta-1-pyrroline-5-carboxylate
           dehydrogenase (P5CDH) identical to
           delta-1-pyrroline-5-carboxylate dehydrogenase precursor
           [Arabidopsis thaliana] gi|15383744|gb|AAK73756;
           identical to cDNA delta-1-pyrroline-5-carboxylate
           dehydrogenase precursor (P5CDH) nuclear gene for
           mitochondrial product GI:15383743; contains Pfam profile
           PF00171:aldehyde dehydrogenase (NAD) family protein
          Length = 556

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 726 GQKSHCVKHPRGPIAMLC-FN*TVGFPLSVPVL 631
           GQ+SH  + P GP+ ++  FN    FPL +P+L
Sbjct: 187 GQQSHGYRWPYGPVTIVTPFN----FPLEIPLL 215


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 57  ERSGKSFLFCLSVRVPWNPIEG 122
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 964

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 178 LRTLKIQVRDVRGDVAPVRTHIRSRSQGEEPLVDRIM*VREVGKLDP*LRNKD 336
           ++ LK  ++DVRGD      +  S+ Q  E   + +  +   GKLDP +   D
Sbjct: 214 IQVLKDAIKDVRGDQRVTDRNPESKYQALEKYGNDLTEMARRGKLDPVIGRDD 266


>At1g76110.1 68414.m08838 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to high mobility group protein
           [Plasmodium falciparum] GI:790198; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 338

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/69 (28%), Positives = 26/69 (37%)
 Frame = -3

Query: 286 LFYRLEALHLGTCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGF 107
           L +  E +HL T  G    P    H +PS      A    TPP +R  +   P   S  F
Sbjct: 120 LLFHYEQVHLFTARGPLLHPIATFHANPSTS-KEMALVEYTPPSIRYHNTHPPSQGSSSF 178

Query: 106 HGTRTLRQK 80
               T+  K
Sbjct: 179 TAIGTIEGK 187


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 220 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 131
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,372
Number of Sequences: 28952
Number of extensions: 376391
Number of successful extensions: 1033
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)