Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0034
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   3.3  
At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein si...    28   5.8  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 321 IALVGRRAYGPPDGEWLP-SPMDFSKARGRA-RP 416
           + + G + Y P  GEW+  SP+D  +  GRA RP
Sbjct: 851 VIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRP 884


>At2g45880.1 68415.m05706 glycosyl hydrolase family 14 protein
           similar to beta-amylase GI:13560977 from [Castanea
           crenata]
          Length = 691

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 436 AVRFVGSGLALPLALLKSMGDGNHSPSGGPYARLPTRA 323
           A+R V SGL  P+ L      G  +P+  PY  LP ++
Sbjct: 167 ALRVVSSGLRSPVELSSCRMKGVFTPAPSPYDMLPIQS 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,317,394
Number of Sequences: 28952
Number of extensions: 241268
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)