Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0015
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   2.6  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    29   3.5  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    29   3.5  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   4.6  
At5g42370.1 68418.m05159 expressed protein                             29   4.6  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   6.1  
At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase fa...    28   8.1  
At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase fa...    28   8.1  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 407 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 312
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 473 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 297
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 473 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 297
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 194 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 60
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 133 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 23
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 189 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 91
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g44730.2 68418.m05482 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 282 EALHLGDLLRYGYEPARHLHVH 217
           E LH+GD +R  Y PA+ + +H
Sbjct: 194 EVLHIGDSMRKDYVPAKSIGMH 215


>At5g44730.1 68418.m05481 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|Q94915 Rhythmically
           expressed gene 2 protein (DREG-2) {Drosophila
           melanogaster}; contains InterPro accession IPR005834:
           Haloacid dehalogenase-like hydrolase
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 282 EALHLGDLLRYGYEPARHLHVH 217
           E LH+GD +R  Y PA+ + +H
Sbjct: 194 EVLHIGDSMRKDYVPAKSIGMH 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,971
Number of Sequences: 28952
Number of extensions: 387008
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)