Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0009
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g40230.1 68414.m04784 hypothetical protein 30 0.84
At1g76965.1 68414.m08961 glycine-rich protein 29 1.5
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.6
At5g42370.1 68418.m05159 expressed protein 29 2.6
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 2.6
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 3.4
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 28 4.5
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 28 4.5
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 28 4.5
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 4.5
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 4.5
At5g60000.1 68418.m07524 hypothetical protein 27 5.9
At5g22390.1 68418.m02612 expressed protein 27 5.9
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi... 27 7.9
At2g05210.1 68415.m00549 expressed protein 27 7.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 7.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 7.9
>At1g40230.1 68414.m04784 hypothetical protein
Length = 303
Score = 30.3 bits (65), Expect = 0.84
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 453 HRTHPLP-VQTRHAPVLRANPYSEVTDPICRLPXPTLFYRLEAL-HLGDLLRI 301
H H +P ++ H LR +S T P+ P P+ F L+ HL LL +
Sbjct: 97 HTAHSIPHLRLLHLSRLRLPSHSTTTQPLPLAPPPSFFLSLDRFRHLSSLLTL 149
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 458 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 363
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 245 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 111
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 184 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 74
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 47 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 178
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 142
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 498 NSLKRT*RTNIDQTRHRTHPLPVQTRHAPVLRANPYSEVTDP 373
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 498 NSLKRT*RTNIDQTRHRTHPLPVQTRHAPVLRANPYSEVTDP 373
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 2 KGNPFPIPEPVIGTVSIIVPSSLKTSVRRGNPKWPEDA 115
KG P + + G ++VP +++ +R G KW E+A
Sbjct: 69 KGFPEAEVKWMFGEKEVVVPKAIQLHLRHGWKKWQEEA 106
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 467 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 348
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g60000.1 68418.m07524 hypothetical protein
Length = 149
Score = 27.5 bits (58), Expect = 5.9
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -1
Query: 334 RGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 158
+GS PW+P +GT R+ + + + D T + F FYR WN+
Sbjct: 78 QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135
Query: 157 NAQAEKKTLP 128
N + K P
Sbjct: 136 NKRIWDKVFP 145
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 119 ERSGKSFLFCLSVRVPWNPIEG 184
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
protein
Length = 964
Score = 27.1 bits (57), Expect = 7.9
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Frame = -1
Query: 412 GPQSQSLFRSYGSNLPTSXTYIILSTRGSS---PWRPAADMGTNRRDISTYIPHLNFKVR 242
G Q Y S P S +Y T GS+ P P A G +S Y P +V
Sbjct: 519 GSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVN 578
Query: 241 REYPDTAAN 215
YP N
Sbjct: 579 MRYPAATRN 587
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 240 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 85
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 167 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 48
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 167 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 48
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,032
Number of Sequences: 28952
Number of extensions: 283403
Number of successful extensions: 797
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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