Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0007
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          29   1.8  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.1  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   5.4  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   5.4  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   7.2  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   7.2  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 224 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 129
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 355 RVRIQSET*DDFRECHIKYIQFLRPH 278
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 233 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 114
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 233 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 114
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 258 AKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 139
           AK T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 258 AKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 139
           AK T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 152 AKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,004
Number of Sequences: 28952
Number of extensions: 279493
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)