Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0001
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 58 5e-09
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 57 7e-09
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 31 0.66
At5g15890.1 68418.m01859 expressed protein 29 2.7
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 3.5
At5g02840.2 68418.m00227 myb family transcription factor contain... 28 4.7
At5g02840.1 68418.m00226 myb family transcription factor contain... 28 4.7
At1g79700.1 68414.m09295 ovule development protein, putative sim... 28 4.7
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam... 27 6.2
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 27 6.2
At5g05210.1 68418.m00555 nucleolar matrix protein-related contai... 27 6.2
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 27 6.2
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 6.2
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 6.2
At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4) f... 27 8.2
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 27 8.2
At1g09770.1 68414.m01096 myb family transcription factor contain... 27 8.2
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 57.6 bits (133), Expect = 5e-09
Identities = 33/58 (56%), Positives = 38/58 (65%)
Frame = +1
Query: 46 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 219
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +3
Query: 267 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 401
+A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 73 EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 57.2 bits (132), Expect = 7e-09
Identities = 33/58 (56%), Positives = 39/58 (67%)
Frame = +1
Query: 46 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 219
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56
Score = 47.6 bits (108), Expect = 5e-06
Identities = 18/49 (36%), Positives = 33/49 (67%)
Frame = +3
Query: 255 RLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 401
+++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 69 KVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 30.7 bits (66), Expect = 0.66
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 115 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTVL*G 267
L ++D I T +D + +PR+Q+++ + + KF+ + F A VL G
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDASNVLKG 294
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 170 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 72
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 216
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 246 SPYRLVRKAWTDAKLNEKWTESQ 314
+P + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 246 SPYRLVRKAWTDAKLNEKWTESQ 314
+P + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g79700.1 68414.m09295 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 303
Score = 27.9 bits (59), Expect = 4.7
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Frame = +3
Query: 111 KVSERGRRY*PNSCTG*WTRQWST*ATDPLKPTPSHKIPPQ---IRVHSPYR-LVRKAWT 278
KVS R ++ + T S A+ L K PP+ ++ SPYR + R WT
Sbjct: 3 KVSGRSKKTIVDDEISDKTASASESASIALTSKRKRKSPPRNAPLQRSSPYRGVTRHRWT 62
Query: 279 DAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTA 386
W ++ W K ++ + YD + A
Sbjct: 63 GRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAA 98
>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
beta-monooxygenase N-terminal domain-containing protein
contains Pfam PF03351: DOMON domain
Length = 907
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 189 TDPLKPTPSHKIPPQIR-VHSPYRLVRKAWTDAKLNEKWTESQWAQK 326
T PLKP+ SH+ P+ + + P ++ W + KWT+ Q ++
Sbjct: 613 TRPLKPSCSHRDRPECKNMIDPTTPLKVIWA---MGAKWTDGQLTER 656
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 134 TSTTLTNFPFKGPSATRATRPGSTYRAKGMTFLQRLNTNN 15
T+ T T PS+ A + + ++ +FLQR N NN
Sbjct: 69 TANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNN 108
>At5g05210.1 68418.m00555 nucleolar matrix protein-related contains
Pfam domain, PF04935: Surfeit locus protein 6
Length = 386
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +3
Query: 234 IRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRAR 413
I+VH +L++++ K ++ +W +++ ++K R A R+++N+ R
Sbjct: 300 IKVHDDPKLLKQSIHKDKKRQEKNAEKWKERIEGQQKFKVEKQQKRSGNIADRIEQNKMR 359
Query: 414 TAVFKSLKVKAARAGTFGKK 473
+ K K K R G G+K
Sbjct: 360 -KIAKREK-KLLRPGFEGRK 377
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 165 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYRLVRKAWTDAKLNEKWTESQWAQKLANKEK 344
TR + P+K K ++VH+ +R A A L T + +AQK AN++
Sbjct: 19 TRAYGLPRVRPIKDVQPRKT---LKVHNQ---IRAAVGVAPLKWNKTVAAYAQKFANRQA 72
Query: 345 RAQMTDYDRFK 377
+A + DY +
Sbjct: 73 KAGVCDYSSMR 83
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 216
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 64 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 216
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 138
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 14 HCLC*DVVRTSCLLHGT 64
HCLC V SCLLH T
Sbjct: 96 HCLCLPHVHMSCLLHET 112
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 203 TNSISQNSASNTRSQPLPSCEESVD 277
+NS++ S S +R PLPS + SVD
Sbjct: 284 SNSVTPGSPSASRLHPLPSGKNSVD 308
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 261 VRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 440
VRK + + + ++++ E+RA+ T + + + T + + FK+LK
Sbjct: 700 VRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEVECFKALKR 758
Query: 441 KAARAGTFGKKNI 479
+ A +F KKN+
Sbjct: 759 QEEMAASFRKKNL 771
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,377,409
Number of Sequences: 28952
Number of extensions: 230786
Number of successful extensions: 709
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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