Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20039
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    29   2.5  
At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein ...    27   10.0 

>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 39  SIYS-AAP-IYNEYVRHRVCTKSNSLLLHGFGREATNDKRISRMFHLTGGRTSCES 200
           SIYS   P I N+++ H+V   S   L++GF  + +N+   S M  L  G    ES
Sbjct: 681 SIYSNGGPGISNDFLPHKVMLTSPIKLINGFVADPSNNTGQSEMLQLENGGYMDES 736


>At1g29600.1 68414.m03619 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 287

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
 Frame = +3

Query: 129 REATNDKRISRMFHLTGGRTSCESARVGTTALPISAVKQ*CVRFE-----GWGSRCNY 287
           R  T D+R S    +  GRT    A V ++A P+   +  C+ +       WGS C Y
Sbjct: 97  RARTQDRRGSESRMMFDGRTQWSHAPVLSSAYPVRPGEDNCLFYMKNHLCEWGSECCY 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,677
Number of Sequences: 28952
Number of extensions: 306907
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)