Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20036
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   2.3  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   3.1  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    29   3.1  
At1g56660.1 68414.m06516 expressed protein                             28   5.4  
At5g51650.1 68418.m06404 hypothetical protein                          27   7.1  
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    27   9.4  
At1g62250.2 68414.m07023 expressed protein                             27   9.4  
At1g62250.1 68414.m07022 expressed protein                             27   9.4  
At1g47310.1 68414.m05238 expressed protein                             27   9.4  

>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 294 VKSYFPIQFRVIFTEQTVKLINKR-DHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTP 470
           V S + +QF V  +   +  IN R D HAL ++ + + +K+ F D    +    +  F P
Sbjct: 76  VPSVYELQFAVPMSGAVLNNINPRLDAHALSVLLRHSESKLVFVDHHSSSLVLEAVSFLP 135

Query: 471 VLENNRV 491
             E  R+
Sbjct: 136 KDERPRL 142


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 377 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 285
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 423 DSKDKTSKKVSWKFTPVLENNRVYF-KIMSPRTNST*SSITRKVLVMTVSFYGDSTA 590
           D +++  KK+ WK     E N+VY  +I++    +    +  K   ++  +YG S++
Sbjct: 277 DMEEERDKKMFWKMYFAFEGNKVYCEQILNSDLKAELEKLKEKEYTLSDYYYGSSSS 333


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 180 EGKEGRGYQGSREASDRKRQEEHHGFAYQLWTKDGKE 290
           +GK+ +G +G  E  D ++++EH     ++  KD K+
Sbjct: 213 KGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKK 249


>At5g51650.1 68418.m06404 hypothetical protein 
          Length = 206

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 174 ISEGKEGRGYQGSREASDRKRQEEHHGFAYQLWTKDGKEIVKSYFPI 314
           + E KEG   QG  E  ++   E+    A+  W KDG   V   + I
Sbjct: 38  VQERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAI 84


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 148 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDSP 261
           ETA       L E  GE I+  V+RL+ +GK +   SP
Sbjct: 334 ETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  LCLPSSSPCVRWLLTPHLHQELMTYWR 113
           LC P  +  +RW  TP +  E+++ WR
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWR 206


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 33  LCLPSSSPCVRWLLTPHLHQELMTYWR 113
           LC P  +  +RW  TP +  E+++ WR
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWR 206


>At1g47310.1 68414.m05238 expressed protein
          Length = 395

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +3

Query: 333 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKI 503
           T QTV  +  +   A  ++  Q   + + G ++   SKKV+W+  P +E  RV+F++
Sbjct: 286 TRQTVSSVTAK-LKASGMVRFQLEIERSIGKNESVISKKVAWRTKPKIE--RVWFEV 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,675
Number of Sequences: 28952
Number of extensions: 285250
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)