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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20016
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...   102   2e-22
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...   101   4e-22
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    97   9e-21
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote...    33   0.22 
At4g37190.1 68417.m05265 expressed protein                             31   0.87 
At4g02990.1 68417.m00406 mitochondrial transcription termination...    29   3.5  
At3g01840.1 68416.m00125 protein kinase family protein contains ...    29   3.5  
At2g10965.1 68415.m01171 hypothetical protein                          29   3.5  
At3g17830.1 68416.m02273 DNAJ heat shock family protein similar ...    28   4.7  
At3g02280.1 68416.m00209 flavodoxin family protein low similarit...    28   4.7  
At1g79020.1 68414.m09214 transcription factor-related similar to...    28   4.7  
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ...    28   6.1  

>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score =  102 bits (245), Expect = 2e-22
 Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +1

Query: 1   ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY-GRGRDWNVDLI 177
           ILSG+LSV G KVLH+DRN YYGGES S+  L +L+ KF        + G  RD+NVD++
Sbjct: 18  ILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEEKAPAHLGSSRDYNVDMM 76

Query: 178 PKFLMANGLLVKLLIHTGVTRYLEF 252
           PKF+MANG LV++LIHT VT+YL F
Sbjct: 77  PKFMMANGKLVRVLIHTDVTKYLSF 101



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 41/86 (47%), Positives = 53/86 (61%)
 Frame = +3

Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
           +++GSYV+  GK+ KVP    EAL S LMG+FEKRR   F  YVQ++ E+D KT    D 
Sbjct: 103 AVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDL 162

Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
                + L  KFGL  +T DF GHA+
Sbjct: 163 RRVTTKDLIAKFGLKEDTIDFIGHAV 188



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 26/31 (83%)
 Frame = +2

Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
           +AL+ +DN+L QPA  T+ R+KLY++SLA++
Sbjct: 188 VALHCNDNHLHQPAYDTVMRMKLYAESLARF 218


>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score =  101 bits (242), Expect = 4e-22
 Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
 Frame = +1

Query: 1   ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP--APDETYGRGRDWNVDL 174
           ILSG+LSV G KVLH+DRN YYGGES S+  L +L+ KF     AP E  G  RD+NVD+
Sbjct: 18  ILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEEKAP-EHLGASRDYNVDM 75

Query: 175 IPKFLMANGLLVKLLIHTGVTRYLEF 252
           +PKF+M NG LV+ LIHT VT+YL F
Sbjct: 76  MPKFMMGNGKLVRTLIHTDVTKYLSF 101



 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 41/86 (47%), Positives = 55/86 (63%)
 Frame = +3

Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
           +++GSYV+  GK+ KVP    EAL S LMG+FEKRR   F  +VQ++ E+D KT    D 
Sbjct: 103 AVDGSYVFVKGKVQKVPATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDL 162

Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
           +    + L  K+GLD NT DF GHA+
Sbjct: 163 TRVTTKELIAKYGLDGNTIDFIGHAV 188



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/31 (48%), Positives = 25/31 (80%)
 Frame = +2

Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
           +AL+ +D +L QPA  T+ R+KLY++SLA++
Sbjct: 188 VALHTNDQHLDQPAFDTVMRMKLYAESLARF 218


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 45/86 (52%), Positives = 59/86 (68%)
 Frame = +3

Query: 255 SIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDP 434
           +++GS+VYK GKI KVP    EAL S LMG+FEKRR R F IYVQD+ E+D K+ +  D 
Sbjct: 23  AVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDL 82

Query: 435 STANMQSLYDKFGLDRNTQDFTGHAL 512
           S    + +  K+GL+ +T DF GHAL
Sbjct: 83  SKVTAREIISKYGLEDDTIDFIGHAL 108



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 19/31 (61%), Positives = 27/31 (87%)
 Frame = +2

Query: 509 LALYLDDNYLQQPAIQTIRRIKLYSDSLAKY 601
           LAL+ DD+YL QPAI  ++RIKLY++SLA++
Sbjct: 108 LALHNDDDYLDQPAIDFVKRIKLYAESLARF 138



 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +1

Query: 190 MANGLLVKLLIHTGVTRYLEF 252
           MANGLLV+ LIHT VT+YL F
Sbjct: 1   MANGLLVQTLIHTDVTKYLNF 21


>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein similar to
           SP|P26374 Rab proteins geranylgeranyltransferase
           component A 2 (Rab escort protein 2) {Homo sapiens};
           contains Pfam profile PF00996: GDP dissociation
           inhibitor
          Length = 563

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   ILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLEELFAKFNAPAP 132
           +L+   S SG  VLH+D N +YG   AS++ P    F   N+ +P
Sbjct: 28  VLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDLTSFLHSNSVSP 72


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 399 EEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 512
           +E+ + W DF  S  + QSLY+  GL  ++Q F  + +
Sbjct: 146 DEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYGI 183


>At4g02990.1 68417.m00406 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 541

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 497 EILGVSI*PKLIVQRLHVCS*GIKILP-CLGIFFLEILNVD*EVAETPLLKHAHKIRRKS 321
           EI+G+ + PKL  QR  +CS  I + P  LG   +E +     ++E+P+LKH   + +  
Sbjct: 349 EIIGIDLKPKLDTQRKLLCS-AIHLNPEDLG-SLIERMPQFVSLSESPMLKHIDFLTKCG 406

Query: 320 F 318
           F
Sbjct: 407 F 407


>At3g01840.1 68416.m00125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 477 LTQTYRTATACLQLRDQNPSMSWHLLPGNLERRL 376
           ++Q+ +  T CL +R++NP +S   L  N++ RL
Sbjct: 124 VSQSLQGLTTCLSIREKNPHISEDKLGDNIKLRL 157


>At2g10965.1 68415.m01171 hypothetical protein
          Length = 249

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 417 WKDFDPST--ANMQSLYDKFGLDRNTQDFTGHALP 515
           WKD+ P    A+    +D  GLDR      GH LP
Sbjct: 198 WKDWSPMKLKASQTVFFDSQGLDRECSLLGGHILP 232


>At3g17830.1 68416.m02273 DNAJ heat shock family protein similar to
           SP|P35514 Chaperone protein dnaJ {Lactococcus lactis};
           contains Pfam profiles PF00226: DnaJ domain, PF01556:
           DnaJ C terminal region, PF00684: DnaJ central domain (4
           repeats)
          Length = 517

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 629 TMGKGKETYHTSLVNQNTT*CGEWSG*QAVANNYHP--NKGQGMSSEILGVS 480
           TM  G + Y T  VN+N T     S  + +A  YHP  NK  G   +   +S
Sbjct: 57  TMAAGTDHYSTLNVNRNATLQEIKSSYRKLARKYHPDMNKNPGAEDKFKQIS 108


>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
           to SP|Q05001 NADPH-cytochrome P450 reductase (EC
           1.6.2.4) {Catharanthus roseus}, similar to
           NADPH-dependent FMN and FAD containing oxidoreductase
           [Homo sapiens] GI:6694369; contains Pfam profiles
           PF00258: flavodoxin, PF00667: FAD binding domain,
           PF00175: Oxidoreductase NAD-binding domain
          Length = 623

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
 Frame = +3

Query: 291 ISKVPVDQKE--ALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYD 464
           I+++P+  K    L  D+     +R F   + +    + E  +    +  S      LY+
Sbjct: 306 ITQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERL--QYFASPEGRDDLYN 363

Query: 465 KFGLDRNT-----QDFTGHALPFIWMIIICNSLLSRPFAASSCILIH 590
               +R +     +DF    +PF W++ +   L  R F+ SS  L H
Sbjct: 364 YNQKERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAH 410


>At1g79020.1 68414.m09214 transcription factor-related similar to
           enhancer of polycomb (GI:3757890) [Drosophila
           melanogaster]; similar to enhancer of polycomb
           (GI:11907923) [Homo sapiens]
          Length = 453

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 389 LNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 261
           + VD EVA  P  K A +I    F ++D Y  D+S TF    S+
Sbjct: 47  VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90


>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 238

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 19  SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 198
           ++ G K  H +  K  GG S+S++  E++ +  +  +      RG D N+  IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216

Query: 199 G 201
           G
Sbjct: 217 G 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,730
Number of Sequences: 28952
Number of extensions: 314096
Number of successful extensions: 821
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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