Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20015
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    28   4.3  
At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit, ...    28   5.7  
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein...    27   10.0 
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ...    27   10.0 

>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 420 YVPLGY*DHNFPIHKSPQNLQQ-CTRYPFWFLIPPRP 313
           +VP     + FP+H+ PQN  Q  + YP    +PPRP
Sbjct: 148 HVPAYRDPYGFPVHRIPQNFYQGPSHYP--NQMPPRP 182


>At2g25540.1 68415.m03057 cellulose synthase, catalytic subunit,
           putative similar to cellulose synthase-1 [gi:9622874]
           and -2 [gi:9622876] from Zea mays
          Length = 1065

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 273 RHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGF 377
           + L+G I Q+    G++   T+TG+V+ A N  GF
Sbjct: 26  KDLNGQICQI---CGDDVGLTKTGNVFVACNECGF 57


>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative similar to Heterogeneous
           nuclear ribonucleoprotein SP|P55795, SP|P31943,
           SP|P52597 {Homo sapiens}; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM) domain
          Length = 289

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +3

Query: 306 GELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYL 443
           G     G K R        +    +GSG Y++ + R R  Q   YL
Sbjct: 19  GNKNRRGRKRRPWRQVMYGSRGAMFGSGGYEVGSKRQRMMQSNPYL 64


>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
           13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
           gi:1654140 [Lycopersicon esculentum]
          Length = 917

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 348 RYPFWFLIPPRPTLLQLVRSRRSNVFEQVNPFVSTFIITPHVSSLRTIKSRL 193
           +YPF   +P RPTLL      R  + ++ +P    F+  P  S L ++ ++L
Sbjct: 774 QYPFGGYVPNRPTLL------RKLIPQETDPDYEMFMRNPQYSFLGSLPTQL 819


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,346,465
Number of Sequences: 28952
Number of extensions: 246192
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)