Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20013
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00...    30   0.77 
At2g22670.2 68415.m02687 auxin-responsive protein / indoleacetic...    29   1.8  
At2g22670.1 68415.m02686 auxin-responsive protein / indoleacetic...    29   1.8  
At5g62550.1 68418.m07850 expressed protein                             28   4.1  
At5g49650.2 68418.m06145 xylulose kinase, putative similar to D-...    27   7.2  
At5g49650.1 68418.m06146 xylulose kinase, putative similar to D-...    27   7.2  
At5g11450.1 68418.m01337 oxygen-evolving complex-related 23 kDa ...    27   7.2  
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu...    27   7.2  
At3g09922.1 68416.m01184 hypothetical protein no ATG start, anno...    27   7.2  
At3g45440.1 68416.m04905 lectin protein kinase family protein co...    27   9.5  
At3g30560.1 68416.m03867 hypothetical protein                          27   9.5  

>At1g56400.1 68414.m06486 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 479

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 310 ILTILELNLFSFFNCIRTFLIPPRWRW--NKAQSTIFKRKCFVSY 438
           +L I+ ++  SF  CIRT ++  RWR+   + ++  FK   +V +
Sbjct: 21  VLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYVDH 65


>At2g22670.2 68415.m02687 auxin-responsive protein / indoleacetic
           acid-induced protein 8 (IAA8) identical to SP|Q38826
           Auxin-responsive protein IAA8 (Indoleacetic acid-induced
           protein 8) {Arabidopsis thaliana}
          Length = 319

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 223 SFCLSISPNVCPSVVWRNIRRFRCAFTETSSGFLPASLNNQFLD--RLAPSTVPERIIMP 50
           S C S+  +  P+VV ++   F+   TE   G   +    +  D   L+P T  E+++ P
Sbjct: 28  SDCSSVDSSTIPNVVGKSNLNFKA--TELRLGLPESQSPERETDFGLLSPRTPDEKLLFP 85

Query: 49  LMPLNPSG 26
           L+P   +G
Sbjct: 86  LLPSKDNG 93


>At2g22670.1 68415.m02686 auxin-responsive protein / indoleacetic
           acid-induced protein 8 (IAA8) identical to SP|Q38826
           Auxin-responsive protein IAA8 (Indoleacetic acid-induced
           protein 8) {Arabidopsis thaliana}
          Length = 321

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 223 SFCLSISPNVCPSVVWRNIRRFRCAFTETSSGFLPASLNNQFLD--RLAPSTVPERIIMP 50
           S C S+  +  P+VV ++   F+   TE   G   +    +  D   L+P T  E+++ P
Sbjct: 28  SDCSSVDSSTIPNVVGKSNLNFKA--TELRLGLPESQSPERETDFGLLSPRTPDEKLLFP 85

Query: 49  LMPLNPSG 26
           L+P   +G
Sbjct: 86  LLPSKDNG 93


>At5g62550.1 68418.m07850 expressed protein 
          Length = 487

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 269 LKASVTRSKFSDVQFSQYWSSTCFLFLIASEHS 367
           L++SVTR K  D+  S YW +   L    ++HS
Sbjct: 130 LRSSVTRKKVEDLSSSTYWLTHIKLAESVAKHS 162


>At5g49650.2 68418.m06145 xylulose kinase, putative similar to
           D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
          Length = 426

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 471 CAEALTKLFIEVADKTFPLKNGALGF 394
           CAE    +F +   +T PL NG LGF
Sbjct: 354 CAEGSWDVFNKYLQQTQPLNNGKLGF 379


>At5g49650.1 68418.m06146 xylulose kinase, putative similar to
           D-xylulokinase [Pichia stipitis] gi|8100400|gb|AAF72328
          Length = 558

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 471 CAEALTKLFIEVADKTFPLKNGALGF 394
           CAE    +F +   +T PL NG LGF
Sbjct: 354 CAEGSWDVFNKYLQQTQPLNNGKLGF 379


>At5g11450.1 68418.m01337 oxygen-evolving complex-related 23 kDa
           polypeptide of water-oxidizing complex of photosystem
           II, Nicotiana tabacum, EMBL:NT23WOP2B
          Length = 297

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 196 VCPSVVWRNIRRFRCAFTETSSGFLPASLNNQFLDRLAPST--VPERIIMPLMPLNPSGL 23
           +CPS+   N R FRC  +  SS +  AS     + R   ST  +     +    L   GL
Sbjct: 4   LCPSLPSPNSRLFRCRSSNISSKYHGAS-KELMIARSGVSTRSISSEKGLSRRDLVLIGL 62

Query: 22  NSPFSMY 2
           +SP SM+
Sbjct: 63  SSPLSMF 69


>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
            putative similar to multidrug resistant P-glycoprotein
            GI:4204793 from [Solanum tuberosum]
          Length = 1233

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 309  CTSENF-DLVTDAFKATSLYSXRKKQIAGNLF-VSLFPLMS---VLLWYGVILEDSGV 151
            C  E   +L +      S  S R+ QIAG  + VS F + S   + LWYG  L D G+
Sbjct: 868  CAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGL 925


>At3g09922.1 68416.m01184 hypothetical protein no ATG start,
           annotated according to PMID:11123795;  IPS1 mRNA,
           complete sequence GI:8164007
          Length = 80

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 244 KKADSWKSFCLSISPNVCPSVVWR 173
           +KADS   FCLS S N   S++W+
Sbjct: 3   QKADSDCEFCLSPSRNWATSILWQ 26


>At3g45440.1 68416.m04905 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and PS00108: Serine/Threonine protein
           kinases active-site signature, PROSITE:PS00108
          Length = 669

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 33  GFSGIRGIIILSGTVLGASLSRN 101
           GFSG  G +I    +LG SLSRN
Sbjct: 237 GFSGATGTLISYQYILGWSLSRN 259


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 88   LAPSTVPERIIMPLMPLNPSGLNSPFSM 5
            L  + V + +I+P MPL PS    PF M
Sbjct: 1366 LTGTRVGKLVIIPRMPLTPSDRRLPFKM 1393


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,444
Number of Sequences: 28952
Number of extensions: 217205
Number of successful extensions: 602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)