Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30018
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62440.1 68416.m07014 F-box family protein contains F-box dom...    34   0.15 
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ...    33   0.34 
At1g50790.1 68414.m05712 hypothetical protein                          31   0.78 
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ...    31   1.0  
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ...    31   1.0  
At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90) ...    29   3.1  
At1g69210.1 68414.m07923 expressed protein                             29   3.1  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   5.5  
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s...    28   9.6  

>At3g62440.1 68416.m07014 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 457

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
 Frame = +3

Query: 387 YKTYTQALPYFDRLDYVSMMCNEQCYS---LAVE-----KLLNIDVPLR-AKYIRTLFAE 539
           +  + +ALP F +L ++S+  +  C+S   + ++     K LNID PL    Y R     
Sbjct: 317 FYVFREALPVFQKLSHLSVNLSNFCWSSMPMLIKKAPNLKTLNIDGPLHYESYYRCAGDI 376

Query: 540 ITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVS 665
               ++    + +  L+V  +T ++  F E  +M  F E++S
Sbjct: 377 FCECVSEYSFLVSCPLEVLKITEYYGSFRELMQMKHFLEKLS 418


>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 908

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 599 RPHVERVR---ADRHDVVQ*AGYLRKQSSDVLGPQRNIDVQQLLDG 471
           + HV R+     DRH V      + K+ SDV+G  ++  +QQ++DG
Sbjct: 92  KKHVRRLARFLTDRHKVASDIEGITKRISDVIGEMQSFGIQQIIDG 137


>At1g50790.1 68414.m05712 hypothetical protein
          Length = 812

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 18  NVLLRKSPNFGQKSVLLKNIPAVHNV--NSQRDGHRWFPDPDFVKQFEGPVMYPDEST 185
           N+LL+  P     + L +       +  NS+ DG  W P    VK ++ P  YP+++T
Sbjct: 286 NLLLKGEPRLALWNDLKQRTSNAKRILNNSKIDGFEWCPYTKTVKNWDFPQFYPEKAT 343


>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 599 RPHVERVRA---DRHDVVQ*AGYLRKQSSDVLGPQRNIDVQQLLDG 471
           + HV R+     DRH V      + K+ S+V+G  ++  +QQ++DG
Sbjct: 92  KKHVRRLACFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDG 137


>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein. Closest
           Col-0 homolog to RPP8
          Length = 908

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -2

Query: 599 RPHVERVRA---DRHDVVQ*AGYLRKQSSDVLGPQRNIDVQQLLDG 471
           + HV R+     DRH V      + K+ S+V+G  ++  +QQ++DG
Sbjct: 92  KKHVRRLACFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDG 137


>At5g05690.1 68418.m00626 cytochrome P450 90A1 (CYP90A1) (CYP90)
           (CPD) identical to Cytochrome P450 90A1 (SP:Q42569)
           [Arabidopsis thaliana]
          Length = 472

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 178 SSGYMTGPSNCFTKSGSGNQRCP 110
           S+   TGPSN FT  G G + CP
Sbjct: 397 SNSVTTGPSNVFTPFGGGPRLCP 419


>At1g69210.1 68414.m07923 expressed protein
          Length = 305

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = +3

Query: 618 LFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDE 782
           + ++ EK +E +   +  R +  Y+R   +S +     MD++ EFS +F +R+D+
Sbjct: 139 VLKQSEKDLELFAFKTSPRGYI-YVRLDKLSTEYGCPTMDELEEFSREFKKRLDD 192


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 471 PDCSTARCTSWTRSPDGRSTAGLGCMSCIRSVFQYHGAGDLCE 343
           PDCS AR T    S +GRS   L  MSC   +    G G +C+
Sbjct: 519 PDCSAARFTGNGDSNNGRSKLELPEMSCASGL---GGKGVVCK 558


>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
           similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
           GI:6273457; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 572

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 591 VGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAE 770
           + A+  F  L E+ + + E  + VS     A   RPGG  LD+P  ++    + S   A+
Sbjct: 126 IEAVKAFSKLSEKAKDVREIPDCVSRVLDRAVSGRPGGCYLDIPTDVLRQ--KISESEAD 183

Query: 771 R-IDEVE 788
           + +DEVE
Sbjct: 184 KLVDEVE 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,099
Number of Sequences: 28952
Number of extensions: 405912
Number of successful extensions: 1142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)