Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30012X
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 177 3e-45
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 173 6e-44
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 173 6e-44
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 29 2.0
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 2.0
At2g31890.1 68415.m03896 expressed protein 28 3.5
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 6.2
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong... 27 8.2
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong... 27 8.2
At1g33780.1 68414.m04175 expressed protein similar to At3g29240 ... 27 8.2
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 177 bits (432), Expect = 3e-45
Identities = 85/118 (72%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDR 369
PLGL+PKK+G+DIAK T+ +WKGL++TV+LTVQNRQA++ VVP AAAL+I+ALKEP RDR
Sbjct: 34 PLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDR 93
Query: 370 KKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
KK KNIKHNGNIS +DVI IAKIMR RS+A+ LSG+VKEILGT SVGCTV+G+ D
Sbjct: 94 KKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKD 151
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPK DP++I V +R GGEVGA SSLAPKI
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKI 32
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 173 bits (421), Expect = 6e-44
Identities = 82/118 (69%), Positives = 102/118 (86%), Gaps = 1/118 (0%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDR 369
PLGL+PKK+G+DIAK T+ +WKGL++TV+LTVQNRQA++ VVP AAAL+I+ALKEP RDR
Sbjct: 34 PLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDR 93
Query: 370 KKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
KK KNIKHNGNIS +DV IA+IMR RS+A+ LSG+V+EILGT SVGCTV+G+ D
Sbjct: 94 KKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKD 151
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPK DP++I V +R GGEVGA SSLAPKI
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKI 32
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 173 bits (421), Expect = 6e-44
Identities = 82/118 (69%), Positives = 102/118 (86%), Gaps = 1/118 (0%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDR 369
PLGL+PKK+G+DIAK T+ +WKGL++TV+LTVQNRQA++ VVP AAAL+I+ALKEP RDR
Sbjct: 34 PLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDR 93
Query: 370 KKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
KK KNIKHNGNIS +DV IA+IMR RS+A+ LSG+V+EILGT SVGCTV+G+ D
Sbjct: 94 KKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKD 151
Score = 48.0 bits (109), Expect = 4e-06
Identities = 22/32 (68%), Positives = 25/32 (78%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPK DP++I V +R GGEVGA SSLAPKI
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKI 32
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = -1
Query: 539 CDGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIFFCFLRSR 360
C G+PS + C+V P R+ ++ + I + ++ +L LC+++ C+ + R
Sbjct: 629 CGGIPS-LQLQPCSVEL-----PRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLR 682
Query: 359 GGSLRA 342
S+RA
Sbjct: 683 VKSVRA 688
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 437 IFAIPITSSREMLPLCLIFFCFL 369
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 352 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 459
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 437 IFAIPITSSREMLPLCLIFFCFL 369
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 592
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 330 GCCIGNNSYLGLSVLNCQLHSDLETLPVTCGLG 232
G C+ + GLSVLN + E LPV C +G
Sbjct: 94 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 126
>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
similarity to pyruvate decarboxylase 1 [Vitis vinifera]
GI:10732644; contains InterPro entry IPR000399: Pyruvate
decarboxylase
Length = 603
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 330 GCCIGNNSYLGLSVLNCQLHSDLETLPVTCGLG 232
G C+ + GLSVLN + E LPV C +G
Sbjct: 105 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 137
>At1g33780.1 68414.m04175 expressed protein similar to At3g29240
[Arabidopsis thaliana]; contains Pfam profile PF02622:
Uncharacterized ACR, COG1678
Length = 325
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 239 PQVTGRVSRSLCS*QFKTDKPR*LLFPMQQPLSSEPLRSLLVIVKSKKISNTTATSP 409
P+ + SR LC +F+ + + +S+ P RSL+V SKK SN ++SP
Sbjct: 23 PEKSSSFSRKLCELEFRF---------LNRKVSASPYRSLVVRATSKK-SNDDSSSP 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,128
Number of Sequences: 28952
Number of extensions: 284733
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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