Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0041
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 104 8e-23
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 104 8e-23
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 104 8e-23
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 8e-04
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 41 0.001
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.014
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.042
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 34 0.096
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 33 0.17
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.17
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 33 0.17
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 33 0.22
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 33 0.22
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.22
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.22
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 33 0.22
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 33 0.29
At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 33 0.29
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 33 0.29
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 32 0.51
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 32 0.51
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 32 0.51
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.68
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 31 0.68
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 31 0.68
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 31 0.90
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 1.2
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 31 1.2
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 30 2.1
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 30 2.1
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 29 2.7
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 2.7
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 2.7
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 2.7
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 2.7
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 2.7
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 3.6
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 3.6
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 3.6
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 29 3.6
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 29 4.8
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 29 4.8
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 29 4.8
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 29 4.8
At5g26850.1 68418.m03203 expressed protein 28 6.3
At1g30010.1 68414.m03670 intron maturase, type II family protein... 28 6.3
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 28 8.3
At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserin... 28 8.3
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 104 bits (249), Expect = 8e-23
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 NNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
N EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 434 ATTLVLLRINRAATCVKWSPMENKFLSG 517
TLV+LR+NRAA CV+WSP ENKF G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +1
Query: 508 SVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSG 687
+VGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS
Sbjct: 115 AVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFST 174
Query: 688 LYQG 699
+G
Sbjct: 175 FIKG 178
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAFSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 104 bits (249), Expect = 8e-23
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 NNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
N EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 434 ATTLVLLRINRAATCVKWSPMENKFLSG 517
TLV+LR+NRAA CV+WSP ENKF G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +1
Query: 508 SVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSG 687
+VGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS
Sbjct: 115 AVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFST 174
Query: 688 LYQG 699
+G
Sbjct: 175 FIKG 178
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWA 436
Y++E N W H+ V + W PN + T S D V++ +G D K+A
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYA 184
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAFSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 104 bits (249), Expect = 8e-23
Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 NNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
N EVHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+ + +W
Sbjct: 31 NTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL-EGAEW 89
Query: 434 ATTLVLLRINRAATCVKWSPMENKFLSG 517
TLV+LR+NRAA CV+WSP ENKF G
Sbjct: 90 VPTLVILRLNRAALCVQWSPKENKFAVG 117
Score = 89.4 bits (212), Expect = 2e-18
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +1
Query: 508 SVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSG 687
+VGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ WHPNN+LL S D K RVFS
Sbjct: 115 AVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFST 174
Query: 688 LYQG 699
+G
Sbjct: 175 FIKG 178
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 204 ITCHAWNKDRSQIAFSP 254
ITCHAW+ D S +A P
Sbjct: 13 ITCHAWSPDLSMVALCP 29
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 275 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 412
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 281 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 448
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 449 LLRINRAATCVKWSP 493
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 281 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 538 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPN--NILLVAGSADFKVRVFSGLYQG 699
I + E N W H+ + +V SI W P+ + L G++D + VFS G
Sbjct: 83 ILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADG 138
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 418
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 419 DDGKWATTLVLLRINRAATCVKWS 490
+G+ VL V WS
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS 268
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 314 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 488 SPME 499
+P E
Sbjct: 112 APHE 115
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/74 (22%), Positives = 37/74 (50%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 452 LRINRAATCVKWSP 493
+ V+W P
Sbjct: 160 TGHTQDVKMVQWHP 173
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = +2
Query: 239 NCILTXNNEVHIY---KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV- 406
+C+ T + + ++ EGN++ L H V + W P + + +CS D V
Sbjct: 131 SCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVW 190
Query: 407 WTQGDDGKWATTLVLLRINRAATCVKWS 490
W++ DDG++ L N + WS
Sbjct: 191 WSEDDDGEYQCVQTLGESNNGHSSTVWS 218
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +2
Query: 281 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 448
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 449 LLRINRAATCVKWSP 493
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 35.9 bits (79), Expect = 0.031
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 538 ICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI--LLVAGSADFKVRVFSGLYQG 699
I + E N W H+ +S+V SI W P++I L GS+D + VF+ G
Sbjct: 83 ILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADG 138
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 418
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 419 DDGKWATTLVLLRINRAATCVKWS 490
+G+ VL V WS
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS 268
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 472
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 473 TCVKWSP 493
+ W+P
Sbjct: 107 NSIAWAP 113
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 281 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 433
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.014
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 427
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
N E ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.5 bits (78), Expect = 0.042
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 326 DLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
DL+V +DW P NRIV+ S D VW
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVW 30
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 34.3 bits (75), Expect = 0.096
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 502
H + W P ++ T S D+ +W+ +D + LVL + T V W+ ++
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWTGLDR 754
Query: 503 KFLSG 517
SG
Sbjct: 755 NEKSG 759
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +2
Query: 236 SNCILTXNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT- 412
S+C + I+ E WK L H L V ++++ + +++ S DR+ V++
Sbjct: 617 SSCKAQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSI 676
Query: 413 -QGDDGKWATTLV--LLRINRAATCVKWSPMENKF 508
+ D+G+ + L+ + R W+P ++F
Sbjct: 677 QRTDNGEVSHKLMAKVEAHKRIIWACSWNPFGHQF 711
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 445
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 446 VLLRINRAATCVKWSP 493
VL + V W P
Sbjct: 134 VLTGHSEDVKMVLWHP 149
Score = 33.5 bits (73), Expect = 0.17
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 272 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 448
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 449 LLRINRAATCVKWS 490
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 415
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.17
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 451
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K +L H ++ + W+ + +++ S+D+ +W D + T L L N TC
Sbjct: 497 KPVCSLKGHLDAILDLSWS-KSQLLLSSSMDKTVRLW----DIETKTCLKLFAHNDYVTC 551
Query: 479 VKWSPM-ENKFLSG 517
+++SP+ EN FLSG
Sbjct: 552 IQFSPVDENYFLSG 565
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 479 VKWSPM-ENKFLSG 517
V+++P+ ++ F+SG
Sbjct: 402 VQFNPVDDDHFISG 415
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 479 VKWSPM-ENKFLSG 517
V+++P+ ++ F+SG
Sbjct: 402 VQFNPVDDDHFISG 415
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 293 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 472
+WK L H V+ ++W+P+ + + + S+D ++W T VL
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTG---MCTTVLRGHLSLV 163
Query: 473 TCVKWSPMENKFLSGQELD 529
V W P+ F++ Q D
Sbjct: 164 KGVTWDPI-GSFIASQSDD 181
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +2
Query: 257 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 421
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 422 --DGKWATTL 445
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 493
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 494 MENKFLS 514
+ K L+
Sbjct: 280 DDTKLLT 286
>At5g21080.1 68418.m02510 expressed protein predicted proteins -
Arabidopsis thaliana; expression supported by MPSS
Length = 980
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 794 RPPERRIGKLCKQLS*RQLRAPTHSVQADLR-YP*YRPEKTRTLKSAEPATSKMLLGC 624
+P +R+IGKLC+ + LR P + + R Y R E+ ++K K+L+ C
Sbjct: 48 QPNDRKIGKLCEYAAKNPLRIPKITTSLEQRCYKELRMEQFHSVKIVMSIYKKLLVSC 105
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 598 RSTVTSIDWHPNNILLVAGSADFKVRVFSGLYQGYRRSAW 717
R +V + +HP+ LL GSAD ++R++ + SAW
Sbjct: 17 RHSVMDVSFHPSKSLLFTGSADGELRIWDTIQHRAVSSAW 56
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 90
Query: 449 LLRINRAATCVKWSPM 496
L V W P+
Sbjct: 91 LDAHCHYVQGVAWDPL 106
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 449 LLRINRAATCVKWSPM 496
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 272 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLV 448
++ E N WK +L H V+ + W+P+ +++ SVD + +W D K + +
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW---DVNKGSVHQI 149
Query: 449 LLRINRAATCVKWSPM 496
L V W P+
Sbjct: 150 LDAHCHYVQGVAWDPL 165
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 245 ILTXNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGD 421
+ T + ++ + G D+ +L H+ +V +D +++ I T S DR +WT G+
Sbjct: 481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGN 540
Query: 422 D 424
D
Sbjct: 541 D 541
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 488 SPMENKFLSGQELD 529
P NK+ LD
Sbjct: 318 HP-TNKYFVSASLD 330
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ L H +V + + +++ ++T S D+ +W DG +A L + V
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTV 317
Query: 488 SPMENKFLSGQELD 529
P NK+ LD
Sbjct: 318 HP-TNKYFVSASLD 330
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVRVF 681
V S+DWHP LLV+G D V+++
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLW 295
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 302 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 478
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 479 VKWSPMENKFLS 514
+ WSP + + L+
Sbjct: 325 ILWSPDDRQVLT 336
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ L H +V I + +T+ ++T S D+ +W +DG + T+ L+ + A
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNY-TSRHTLKDHSAEVRAVT 316
Query: 488 SPMENKFLSGQELD 529
NK+ LD
Sbjct: 317 VHATNKYFVSASLD 330
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 541 CYFEKENNWWVSKHIKKPIR---STVTSIDWHPNNILLVAGSADFKVRVF 681
C ++ W I+ P+R ++ +DWHPN + GS+D VR++
Sbjct: 478 CSHDRTARIWSMDRIQ-PLRIMAGHLSDVDWHPNCNYIATGSSDKTVRLW 526
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 344 IDWAPNTNRIVTCSVDRNAYVW 409
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 583 IKKPIRSTVTSIDWHPN-NILLVAGSADFKVRVF 681
++K + + +DW+P+ N L++ GSAD VRVF
Sbjct: 321 VEKAHDADLHCVDWNPHDNNLILTGSADNTVRVF 354
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNR-IVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 490
HD + +DW P+ N I+T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 491 P 493
P
Sbjct: 385 P 385
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 580 HIKKPIRSTVTSIDWHPNNILLVAGSADFKVR 675
H K + S+D+HP+ LL GSAD V+
Sbjct: 272 HEFKSHEGKIQSLDFHPHEFLLATGSADKTVK 303
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 548 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 320 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 445
EH + + + PN+ ++ T S D+ +W D G + T+
Sbjct: 550 EHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTI 591
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/69 (23%), Positives = 28/69 (40%)
Frame = +2
Query: 308 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 487
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 488 SPMENKFLS 514
SP ++ L+
Sbjct: 349 SPHQSSLLA 357
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 299 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 427
K L EH + I ++P+ R+ T S D+ VW + G
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKG 726
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 272 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 409
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 314 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 493
L H V D++ N I + S+D+ VW + + V+ I+ C+++ P
Sbjct: 212 LTGHSKDVTDFDFSSNNQYIASSSLDKTIRVW---ELSRGVCIRVIYGIS-PQYCIRFHP 267
Query: 494 MENKFLS 514
+ N FLS
Sbjct: 268 VNNNFLS 274
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVR 675
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 607 VTSIDWHPNNILLVAGSADFKVR 675
+ S+D+HP+ LL GSAD V+
Sbjct: 188 IQSLDFHPHEFLLATGSADRTVK 210
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 493
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 494 MENKFLS 514
+ L+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +2
Query: 323 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 493
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 494 MENKFLS 514
+ L+
Sbjct: 315 FQANLLA 321
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 791 PPERRIGKLCKQLS*RQLRAPTHSVQADLR-YP*YRPEKTRTLKSAEPATSKMLLGCQ 621
P ER+I KLC+ + +R P + + R Y R E+ + + A +KML C+
Sbjct: 49 PNERKIVKLCEYAAKNPIRIPKIAKFLEERCYKDLRSEQMKFINIVTEAYNKMLCHCK 106
>At1g30010.1 68414.m03670 intron maturase, type II family protein
similar to SP|Q57005 Group II intron-encoded protein
ltrA {Lactococcus lactis subsp}; contains Pfam profiles
PF01348: Type II intron maturase, PF00078: Reverse
transcriptase (RNA-dependent DNA polymerase
Length = 711
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 500 NKFLSGQELD*YQFAILRRKIIGGCLSILRSPFVRL 607
NKFL D Y++A R+K +G C ++RS +L
Sbjct: 533 NKFLETMA-DWYKYADNRKKAVGFCAYVIRSSLAKL 567
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +2
Query: 233 KSNCILTXNNEVHIY--KKEGN-------DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCS 385
K++C LT N++ H+ ++G D K + HDL V + + P + ++T S
Sbjct: 231 KTDCCLT-NSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSS 289
Query: 386 VDRNAYVW 409
VD VW
Sbjct: 290 VDGTIRVW 297
>At1g31230.1 68414.m03822 bifunctional aspartate kinase/homoserine
dehydrogenase / AK-HSDH nearly identical to gb|X71364
[PIR|S46497] aspartate kinase / homoserine dehydrogenase
from Arabidopsis thaliana; contains ACT domain
Length = 911
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 550 EKENNWWVSKHIKKPIRSTVTSIDWHPNNI--LLVAGSADFKVRVFSGLYQGYRRSAWTE 723
EK W +++ K I +T I P NI L +DF + S L++ ++ + WT+
Sbjct: 252 EKRLEKWFTQNSAKIIIAT-GFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310
Query: 724 CVGALS 741
G S
Sbjct: 311 VDGVYS 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,191,066
Number of Sequences: 28952
Number of extensions: 394561
Number of successful extensions: 1214
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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