Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0004
(543 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 38 0.006
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 36 0.017
At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta... 35 0.031
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta... 35 0.031
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai... 35 0.040
At3g56230.1 68416.m06249 speckle-type POZ protein-related contai... 34 0.053
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ... 33 0.093
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 33 0.093
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ... 33 0.16
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai... 33 0.16
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai... 33 0.16
At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Inter... 32 0.22
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ... 30 0.87
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 29 1.5
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 29 2.0
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 29 2.7
At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ... 28 3.5
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil... 28 4.6
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil... 28 4.6
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 28 4.6
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 28 4.6
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 27 6.1
At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ... 27 6.1
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter... 27 6.1
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 37.5 bits (83), Expect = 0.006
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 276 LIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADVP-MDHCSILFPGVKDFEMR 452
L++ E D T V + F+AHR+VLAA SP F+S DV + I ++ +
Sbjct: 209 LLENEDGSDITFNVSGE-KFRAHRLVLAARSPVFESEFLDVTGEEDRDIEVTDMEPKVFK 267
Query: 453 ALLEYMY 473
ALL Y+Y
Sbjct: 268 ALLHYIY 274
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 35.9 bits (79), Expect = 0.017
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 267 LEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQS-ILADVPMDHCS-ILFPGVKD 440
L+ L+ E D V D+ T+KAH+++LAA SP F++ + ++ I+ ++
Sbjct: 184 LKDLLDSEVGCDIAFQVGDE-TYKAHKLILAARSPVFRAQFFGPIGNNNVDRIVIDDIEP 242
Query: 441 FEMRALLEYMYT 476
+A+L ++YT
Sbjct: 243 SIFKAMLSFIYT 254
>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 294 YVDCTLVVDDQ-VTFKAHRVVLAANSPYFQSILAD-VPMDHCSILF-PGVKDFEMRALLE 464
Y D + + D +TF++H+V+L+ S F + + + H S ++ V +A++
Sbjct: 350 YSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMN 409
Query: 465 YMYTGEVNV 491
+MY+GE+N+
Sbjct: 410 FMYSGELNM 418
Score = 30.3 bits (65), Expect = 0.87
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 LVVDDQVTFKAHRVVLAANSPY-FQSILADVPMDHCSILFPGVKDFEMRALLEYMYTGEV 485
LV ++++ AH+V+L A+ + +S DV I GV + ALL+Y+YTG
Sbjct: 216 LVGEEEMDVPAHKVILQASGNFPLRSSDGDV------IQLRGVSYPILHALLQYIYTGRT 269
Query: 486 NVTQAHI 506
+ ++ +
Sbjct: 270 QILESEL 276
>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
Pfam PF00651: BTB/POZ domain; contains Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
(GI:1841872) [Dictyostelium discoideum]
Length = 809
Score = 35.1 bits (77), Expect = 0.031
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 294 YVDCTLVVDDQ-VTFKAHRVVLAANSPYFQSILAD-VPMDHCSILF-PGVKDFEMRALLE 464
Y D + + D +TF++H+V+L+ S F + + + H S ++ V +A++
Sbjct: 350 YSDIKIYLSDHSLTFQSHKVILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMN 409
Query: 465 YMYTGEVNV 491
+MY+GE+N+
Sbjct: 410 FMYSGELNM 418
Score = 30.3 bits (65), Expect = 0.87
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 LVVDDQVTFKAHRVVLAANSPY-FQSILADVPMDHCSILFPGVKDFEMRALLEYMYTGEV 485
LV ++++ AH+V+L A+ + +S DV I GV + ALL+Y+YTG
Sbjct: 216 LVGEEEMDVPAHKVILQASGNFPLRSSDGDV------IQLRGVSYPILHALLQYIYTGRT 269
Query: 486 NVTQAHI 506
+ ++ +
Sbjct: 270 QILESEL 276
>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 410
Score = 34.7 bits (76), Expect = 0.040
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 333 FKAHRVVLAANSPYFQS-ILADVPMDHCSILFPGVKDFEMRALLEYMY 473
F AH++VLAA SP+F+S ++ ++ + ++ +ALL++MY
Sbjct: 209 FLAHKLVLAARSPFFKSKFFSEFEANNTEVTINDLEPKVFKALLQFMY 256
>At3g56230.1 68416.m06249 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
POZ protein (SP:O43791) [Homo sapiens]
Length = 282
Score = 34.3 bits (75), Expect = 0.053
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +3
Query: 237 ESSQDELVEILEALIKG---ETYVDCTLVV-DDQVTFKAHRVVLAANSPYFQSILAD--- 395
E Q + + L + + G + + D L DD AHR +LA+ S F++IL
Sbjct: 88 EEEQKKRIVFLSSFVSGFKEQLHADILLKPGDDGPPIPAHRALLASKSEIFKNILDSDGC 147
Query: 396 VPMDHCSILFPGVKDFEMRALLEYMYTG 479
+I + +++ALLE++YTG
Sbjct: 148 KTAPEYAITLQELNSEQLQALLEFLYTG 175
>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 467
Score = 33.5 bits (73), Expect = 0.093
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 237 ESSQDELVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILAD 395
ES + ++ L LI G+ + D T V+ ++ AHR +LAA S +F+ +
Sbjct: 7 ESLKSMSLDYLNLLINGQAFSDVTFSVEGRLVH-AHRCILAARSLFFRKFFCE 58
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 33.5 bits (73), Expect = 0.093
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = +3
Query: 333 FKAHRVVLAANSPYFQSILADVPMDHCS-ILFPGVKDFEMRALLEYMY----TGEVNVTQ 497
F+AH++VLAA S +F+S+ + ++ S ++ ++ +ALL +MY G+V
Sbjct: 216 FQAHKLVLAARSQFFRSMFYNTLAENNSDVVISDLEPKVFKALLHFMYKDSLPGDVEPLT 275
Query: 498 AH 503
AH
Sbjct: 276 AH 277
>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 491
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 237 ESSQDELVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQ 380
ES + ++ L LI G+ + D T V+ ++ AHR +LAA S +F+
Sbjct: 6 ESLRSLSLDFLNLLINGQAFSDVTFSVEGRLVH-AHRCILAARSLFFR 52
>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = +3
Query: 342 HRVVLAANSPYFQSILADVPMDHC------SILFPGVKDFEMRALLEYMYTGEV 485
H+ VLAA S F+++L D C SI P + E+++LLE++Y+G +
Sbjct: 40 HKAVLAARSKVFRNMLDS---DECKTSPEESITLPDLSHDELKSLLEFLYSGNL 90
>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
Pfam profile:PF00651 BTB/POZ domain; similar to
Speckle-type POZ protein (SP:O43791) [Homo sapiens]
Length = 207
Score = 32.7 bits (71), Expect = 0.16
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = +3
Query: 342 HRVVLAANSPYFQSILADVPMDHC------SILFPGVKDFEMRALLEYMYTGEV 485
H+ VLAA S F+++L D C SI P + E+++LLE++Y+G +
Sbjct: 40 HKAVLAARSKVFRNMLDS---DECKTSPEESITLPDLSHDELKSLLEFLYSGNL 90
>At1g55760.1 68414.m06384 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 329
Score = 32.3 bits (70), Expect = 0.22
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 243 SQDELVEILEALIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSI-LADVPMDHCSI 419
SQ V L ++ Y D T+ D + AHR VLAA SP F+S+ L D+ S
Sbjct: 146 SQVTAVTSLGRMLTESIYTDITINASDG-SIGAHRAVLAARSPVFRSMFLHDLKEKELSE 204
Query: 420 LFPGVKDFEM---RALLEYMY 473
+ V D + +A L Y+Y
Sbjct: 205 I--NVLDMPLDACQAFLSYIY 223
>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 600
Score = 30.3 bits (65), Expect = 0.87
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Frame = +3
Query: 216 TNFLFKMESSQDELVE-ILEALIKG-ET-YVDCTLVVDDQVTFKAHRVVLAANSPYFQSI 386
T FL E S +L+ LE++ ET Y D LV+ HR +L+A P F+S
Sbjct: 37 TEFLTPPEVSALKLLSNCLESVFDSPETFYSDAKLVLAGGREVSFHRCILSARIPVFKSA 96
Query: 387 LADVPMDHCSI-----LFPGVKDFEMR-----ALLEYMYTGEV 485
LA V S L +D+E+ A+L Y+Y+G V
Sbjct: 97 LATVKEQKSSTTVKLQLKEIARDYEVGFDSVVAVLAYVYSGRV 139
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 276 LIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQS-ILADVPMDHCS-ILFPGVKDFEM 449
L++ D T VD + TF AH++VLAA S F++ + + ++ + I+ V+
Sbjct: 195 LLESGKGADVTFEVDGE-TFPAHKLVLAARSAVFRAQLFGPLRSENTNCIIIEDVQAPIF 253
Query: 450 RALLEYMYTGEV 485
+ LL ++Y E+
Sbjct: 254 KMLLHFIYWDEM 265
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Frame = +3
Query: 288 ETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADVPMDH------CSILFPGVKDFEM 449
E+ D + VD + F H+V+LA+ S YF++ L+ V H P +++ ++
Sbjct: 335 ESLADVCVRVDKR-NFYCHQVILASRSEYFRARLSRVNDFHEGKNGLPGDTLPFLEEHDL 393
Query: 450 RA-----LLEYMYTG---EVNVTQA 500
A ++EYMYT E+N QA
Sbjct: 394 SAEAFEKMIEYMYTDGLKEINPNQA 418
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 276 LIKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSIL 389
L++ D T VD + TF AH++VLAA S F++ L
Sbjct: 195 LLESGKGADVTFEVDGE-TFPAHKLVLAARSAVFRAQL 231
>At5g45110.1 68418.m05536 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 586
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 243 SQDELVEILEALIKGET--YVDCTLVVDDQVTFKAHRVVLAANSPYFQSI 386
S +L LE L+ Y D ++VD V HR +LAA S +FQ +
Sbjct: 40 SLTKLSSNLEQLLSNSDCDYSDAEIIVDG-VPVGVHRCILAARSKFFQDL 88
>At5g63190.2 68418.m07934 MA3 domain-containing protein low
similarity to programmed cell death 4 protein [Gallus
gallus] GI:12958564; contains Pfam profile PF02847: MA3
domain
Length = 702
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Frame = +3
Query: 234 MESSQDELVEILEALIK-GETYVDCTLVVDDQVTFKAHRV-----VLAANSPYFQSIL 389
+E ++ ++ EIL+ ++ G+TY C + + V+F H V VLA +SP +S++
Sbjct: 284 VEETKKKISEILKEYVENGDTYEACRCIRELGVSFFHHEVVKRALVLAMDSPTAESLV 341
>At5g63190.1 68418.m07933 MA3 domain-containing protein low
similarity to programmed cell death 4 protein [Gallus
gallus] GI:12958564; contains Pfam profile PF02847: MA3
domain
Length = 702
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Frame = +3
Query: 234 MESSQDELVEILEALIK-GETYVDCTLVVDDQVTFKAHRV-----VLAANSPYFQSIL 389
+E ++ ++ EIL+ ++ G+TY C + + V+F H V VLA +SP +S++
Sbjct: 284 VEETKKKISEILKEYVENGDTYEACRCIRELGVSFFHHEVVKRALVLAMDSPTAESLV 341
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 303 CTLVVD-DQVTFKAHRVVLAANSPYFQSIL 389
C +V D TF AH++VLA SP F + L
Sbjct: 203 CDVVFQVDGETFNAHKLVLATRSPVFNAQL 232
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 234 MESSQDELVEILEALIK-GETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSILADVPM 404
+E + ++ +IL ++ GETY C V + V+F H VV A ++ A+ P+
Sbjct: 278 VEEVKKKIADILNEYVETGETYEACRCVRELGVSFFHHEVVKRALVTALENHAAEAPV 335
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 279 IKGETYVDCTLVVDDQVTFKAHRVVLAANSPYFQSI 386
+K + D ++ V+D +TFKAH+ L + Y SI
Sbjct: 46 VKSQIPTDLSIQVND-ITFKAHKFPLISKCGYISSI 80
>At4g19660.1 68417.m02888 ankyrin repeat family protein / BTB/POZ
domain-containing protein contains Pfam domain, PF00023:
Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
Length = 601
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 249 DELVEILEALIKGET--YVDCTLVVDDQVT-FKAHRVVLAANSPYF 377
+EL LE L+ Y D ++++++ HR VLAA S +F
Sbjct: 36 EELSSNLEQLLTNPDCDYTDAEIIIEEEANPVSVHRCVLAARSKFF 81
>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
protein (GI:17483747) [Mus musculus]
Length = 243
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 339 AHRVVLAANSPYFQSILADVPMDHCS--ILFPGVKDFEMRALLEYMYTGE 482
AH+ VL + SP F+++L + + S I V +R + Y+YT E
Sbjct: 82 AHKSVLVSRSPVFKAMLENEMEESLSGTIKISDVSYDALRTFVYYLYTAE 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,136
Number of Sequences: 28952
Number of extensions: 246704
Number of successful extensions: 559
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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